Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021226
(792 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic... 29 0.58
SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces ... 29 1.0
SPBC21C3.02c |sds3||Sds3-like family protein|Schizosaccharomyces... 28 1.8
SPBC16D10.09 |pcn1|pcn|PCNA |Schizosaccharomyces pombe|chr 2|||M... 27 3.1
SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase ki... 27 4.1
SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate |Schizos... 26 5.4
SPBC21C3.17c |||conserved fungal protein|Schizosaccharomyces pom... 26 5.4
SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomy... 26 7.1
SPBC15D4.07c |atg9|apg9|autophagy associated protein Atg9 |Schiz... 26 7.1
SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pm... 26 7.1
>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1729
Score = 29.5 bits (63), Expect = 0.58
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = -2
Query: 479 PVRGCRWTSLRLVEGIGTFILLTHAVYYEHDH 384
P CRWT+ L I +FI L AV +E+ H
Sbjct: 372 PPASCRWTACGLAGAIASFITLA-AVVFEYIH 402
>SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 407
Score = 28.7 bits (61), Expect = 1.0
Identities = 20/62 (32%), Positives = 26/62 (41%)
Frame = -2
Query: 458 TSLRLVEGIGTFILLTHAVYYEHDHKDCA**PYYSTXDHSGEYARCAKKLIALSSGLAFM 279
T LR V+ GT + L YY DH D P Y D + C K +S F+
Sbjct: 174 TKLRTVQSCGTNLSLLDNFYYYQDHIDRIFDPQYIPSDQ--DILHCRIKTTGISEE-TFL 230
Query: 278 MN 273
+N
Sbjct: 231 LN 232
>SPBC21C3.02c |sds3||Sds3-like family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 491
Score = 27.9 bits (59), Expect = 1.8
Identities = 27/83 (32%), Positives = 39/83 (46%), Gaps = 3/83 (3%)
Frame = +2
Query: 95 ESAVNKPSGGEVEPHGAGEERPSR--PDQNGEINISE-EDTNPAIDQEQAGTNVDPVRGR 265
E A N +G H + E S +++ E NI ED++ I Q + GT P +G
Sbjct: 183 EKATNDNNGLIETNHNSKLEESSEHEEEEDEESNIERTEDSDHQIPQ-RGGTLEAPRKGG 241
Query: 266 QKCSS*TPSRKTERSASSRTWHT 334
+ S SRK +R+ SR W T
Sbjct: 242 PR--SGVGSRKRKRATVSRKWST 262
>SPBC16D10.09 |pcn1|pcn|PCNA |Schizosaccharomyces pombe|chr
2|||Manual
Length = 260
Score = 27.1 bits (57), Expect = 3.1
Identities = 16/48 (33%), Positives = 27/48 (56%)
Frame = +1
Query: 505 TLRRLGTKHATCLLVGALIKNEHFPPGRHFDFLFLFSNLRSVSGILKC 648
+L+ + + H LV LIK++ F P R + L NL ++S +L+C
Sbjct: 36 SLQAMDSSHVA--LVSMLIKSDGFEPYRCDRNIALGINLNALSKVLRC 81
>SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase kinase
Win1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1436
Score = 26.6 bits (56), Expect = 4.1
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = +3
Query: 687 CSVNHSNETKPDNLLIEFDGIM 752
C V+H + KP+N+L + +GIM
Sbjct: 1238 CGVSHQ-DVKPENILFDHNGIM 1258
>SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 640
Score = 26.2 bits (55), Expect = 5.4
Identities = 10/31 (32%), Positives = 15/31 (48%)
Frame = -2
Query: 281 MMNTSDGREQDPR*CPPAPGQLPDWCLLQRC 189
M + DG E P+ +P PDW + + C
Sbjct: 483 MKDLKDGIEMKPKWLTQSPAAPPDWVVCRTC 513
>SPBC21C3.17c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 186
Score = 26.2 bits (55), Expect = 5.4
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +3
Query: 351 GAVVGLLCAILVVMFIVYRMRKK 419
G VGL C IL+V+F+ + R++
Sbjct: 146 GLSVGLSCCILIVLFLHFATRRE 168
>SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 25.8 bits (54), Expect = 7.1
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = +2
Query: 83 HDILESAVNKPSGGEVEPHGAGEERPSRPDQNGEINISEEDTNP 214
H LES EVE + +E+PS +IN++EE+ P
Sbjct: 390 HSNLESTPAAQQTSEVEANNH-QEKPSSLPAVEQINVNEENNTP 432
>SPBC15D4.07c |atg9|apg9|autophagy associated protein Atg9
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 702
Score = 25.8 bits (54), Expect = 7.1
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Frame = +3
Query: 483 GHNNREFYAETTRNK--TCHVLTSRRSNQE*TLPTWA 587
GH NR Y + RN+ VL +R S ++ L WA
Sbjct: 142 GHPNRSIYTQLPRNEFSNARVLWNRLSARDRVLWRWA 178
>SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pmc1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1292
Score = 25.8 bits (54), Expect = 7.1
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Frame = +3
Query: 285 RQAGRQSDQLLRAPGILAAV--IGGAVVGLLCAILVVMFIVYRMRKKDEGS 431
R G+ + LR + A+ +GGA LL +L++ F+V R++ D S
Sbjct: 430 RTEGQATPLQLRLSRVADAIAKLGGAASALLFIVLLIEFLV-RLKSNDSSS 479
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,251,994
Number of Sequences: 5004
Number of extensions: 66818
Number of successful extensions: 212
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 212
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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