Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021226
(792 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0292 + 2193309-2193338,2193565-2193640,2193744-2195203,219... 32 0.45
03_01_0570 - 4205739-4205776,4205846-4205897,4205939-4206067,420... 31 0.79
05_04_0231 + 19254766-19255153,19255245-19255480,19256609-192566... 31 1.0
03_02_0899 + 12257831-12257858,12258490-12258561,12259121-122604... 31 1.0
09_04_0202 - 15544498-15545037,15546043-15546449,15546874-155469... 30 1.8
08_02_1227 - 25398063-25398302,25398629-25398790,25399019-253991... 29 3.2
02_02_0698 - 13048362-13048937 29 3.2
03_06_0148 + 31982976-31984097 29 4.2
10_01_0030 - 386008-388056,388166-388360,388931-389062,389167-38... 29 5.6
07_01_0709 + 5346074-5346377,5347820-5347918,5348179-5348265,534... 28 7.4
05_05_0326 - 24115205-24115482,24115570-24115669,24116914-24117129 28 7.4
10_05_0046 + 8516043-8516425,8517908-8518019,8518276-8518377,851... 28 9.8
07_01_0853 + 6982185-6983593,6985926-6986497,6987139-6988439 28 9.8
05_05_0044 - 21819193-21819418,21819531-21820759 28 9.8
05_04_0077 - 17712043-17712246,17712487-17712522,17712746-177129... 28 9.8
>12_01_0292 +
2193309-2193338,2193565-2193640,2193744-2195203,
2195479-2195505,2195794-2196024,2196523-2196692,
2197278-2197421,2198036-2198083,2198503-2198566
Length = 749
Score = 32.3 bits (70), Expect = 0.45
Identities = 18/41 (43%), Positives = 21/41 (51%)
Frame = -3
Query: 418 FLRMRYTMNMTTRIAHNNPTTAPPITAASMPGARRS*SLCL 296
F R T TRIAH NP T TA++ P R + SL L
Sbjct: 612 FFRQLMTTGPYTRIAHFNPMTTVSTTASACPDHRTAWSLSL 652
>03_01_0570 -
4205739-4205776,4205846-4205897,4205939-4206067,
4206183-4206258,4206360-4206412,4206494-4206555,
4206624-4206734,4206813-4206979,4207089-4207268,
4207598-4207687,4207773-4207921,4208367-4208501,
4208575-4208630,4208790-4208823,4209409-4209519
Length = 480
Score = 31.5 bits (68), Expect = 0.79
Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Frame = +3
Query: 111 NQAGVRWNRTARGRSDPRALIRTAKSTSLKKTPIRQLT---RSRRALTWILFAAVRSV 275
NQAG+ + A G SDP L+R S + + QLT + ALT +L AA++ +
Sbjct: 36 NQAGMEVDIVANGGSDPHLLLRENPSIHIHEMKSVQLTGILKISGALTLLLKAAIQFI 93
>05_04_0231 +
19254766-19255153,19255245-19255480,19256609-19256632,
19257612-19258009,19258109-19258241,19258399-19258488,
19258613-19258843
Length = 499
Score = 31.1 bits (67), Expect = 1.0
Identities = 30/102 (29%), Positives = 48/102 (47%), Gaps = 10/102 (9%)
Frame = +3
Query: 234 RALTWILFA---AVRSVHHERQAGRQSDQLLRAPGILAAVIGGAVVGLLCAILVVMFIVY 404
R W FA A +HH R+ G + L A IG V LL A++V++ +
Sbjct: 27 RLAPWPPFAPWPAPGQLHHNRRGGGHPNPLFTILPASALAIG---VVLLVAVVVILVMTR 83
Query: 405 RMRKKD-EGSYAL----DEPKRSPAAA--SYGKGHNNREFYA 509
R + +G+ D+P +PA++ S +G+NN +YA
Sbjct: 84 RWKPGTVDGAGGASCNGDKPGGAPASSCGSSVRGYNNSRYYA 125
>03_02_0899 +
12257831-12257858,12258490-12258561,12259121-12260413,
12260593-12261224
Length = 674
Score = 31.1 bits (67), Expect = 1.0
Identities = 15/33 (45%), Positives = 20/33 (60%)
Frame = +3
Query: 330 ILAAVIGGAVVGLLCAILVVMFIVYRMRKKDEG 428
I+AA +GG V LL A + V+ R KKD+G
Sbjct: 297 IIAAAVGGFAVFLLAAAIFVVCFSKRKEKKDDG 329
>09_04_0202 - 15544498-15545037,15546043-15546449,15546874-15546977,
15547580-15547788,15548092-15549428,15551680-15551941
Length = 952
Score = 30.3 bits (65), Expect = 1.8
Identities = 16/69 (23%), Positives = 28/69 (40%)
Frame = +2
Query: 131 EPHGAGEERPSRPDQNGEINISEEDTNPAIDQEQAGTNVDPVRGRQKCSS*TPSRKTERS 310
+ +G G E +P + E + EE+ P Q+G R+ + + R+
Sbjct: 869 DQNGEGLEENHKPQEVNEGDREEENNQPGASTGQSGQQQQQTGAREMSNINLQTSSVRRN 928
Query: 311 ASSRTWHTR 337
+S WH R
Sbjct: 929 SSIFIWHER 937
>08_02_1227 -
25398063-25398302,25398629-25398790,25399019-25399150,
25399909-25399961,25400465-25400942
Length = 354
Score = 29.5 bits (63), Expect = 3.2
Identities = 23/77 (29%), Positives = 33/77 (42%), Gaps = 5/77 (6%)
Frame = +3
Query: 279 HERQAGRQSDQLLRAPGILAAVIGGAVVGLLCAILVVMFIVYRMR---KKDEGSYALDEP 449
H Q R + G ++GG V GLL A V +V KK+ +A EP
Sbjct: 238 HGGQRSRTGGLSVSLAGPDGRLLGGGVAGLLIAATPVQIVVGSFNSEGKKEPKQHAHSEP 297
Query: 450 KRSPAAA--SYGKGHNN 494
+P+ A + G G N+
Sbjct: 298 ASAPSKAVPTAGMGPNS 314
>02_02_0698 - 13048362-13048937
Length = 191
Score = 29.5 bits (63), Expect = 3.2
Identities = 18/42 (42%), Positives = 27/42 (64%)
Frame = +2
Query: 131 EPHGAGEERPSRPDQNGEINISEEDTNPAIDQEQAGTNVDPV 256
E AG+E+ + D +GEIN SE +T+ ++ EQA T + PV
Sbjct: 137 ESSSAGQEQSQQLDISGEIN-SETNTSTEVNIEQA-TQLVPV 176
>03_06_0148 + 31982976-31984097
Length = 373
Score = 29.1 bits (62), Expect = 4.2
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +2
Query: 116 SGGEVEPHGAGEERPSRPDQNGEINISE 199
+GGEVEP G E RP++ N+ +
Sbjct: 308 NGGEVEPAGGDHEAGDRPERGSRENVQQ 335
>10_01_0030 -
386008-388056,388166-388360,388931-389062,389167-389538,
389753-389894,392274-392533,392737-393015,394796-394939
Length = 1190
Score = 28.7 bits (61), Expect = 5.6
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +3
Query: 456 SPAAASYGKGHNNREFYAETTRNKTCHVL 542
SP A+YG+GH R+ A T +C L
Sbjct: 170 SPVIANYGRGHGTRDTCALHTARLSCDAL 198
>07_01_0709 +
5346074-5346377,5347820-5347918,5348179-5348265,
5349012-5349038,5349847-5350013
Length = 227
Score = 28.3 bits (60), Expect = 7.4
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = -2
Query: 347 DHSGEYARCAKKLIALSSGLAFMMNTSDGREQDP 246
D + + A CA KL+ALS+ L F+ + + G P
Sbjct: 11 DFAADRAECADKLMALSTCLTFVQDGASGGAAAP 44
>05_05_0326 - 24115205-24115482,24115570-24115669,24116914-24117129
Length = 197
Score = 28.3 bits (60), Expect = 7.4
Identities = 14/47 (29%), Positives = 21/47 (44%)
Frame = +2
Query: 116 SGGEVEPHGAGEERPSRPDQNGEINISEEDTNPAIDQEQAGTNVDPV 256
+GG+ PH RP+ + +GE E+D QE + V V
Sbjct: 77 AGGDQSPHHQELRRPASKESSGERRWGEQDCRAEPGQEGTSSEVGQV 123
>10_05_0046 +
8516043-8516425,8517908-8518019,8518276-8518377,
8518605-8518657,8518976-8519062,8519162-8519830,
8520154-8520214,8520295-8520342
Length = 504
Score = 27.9 bits (59), Expect = 9.8
Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Frame = +2
Query: 107 NKPSGGEVE-PHGAGEER-PSRPDQNGEINISEED 205
N P G E E P AGEE P D+ GE+ EE+
Sbjct: 6 NHPDGEEEEAPAAAGEEEAPVEMDEEGEMEEEEEE 40
>07_01_0853 + 6982185-6983593,6985926-6986497,6987139-6988439
Length = 1093
Score = 27.9 bits (59), Expect = 9.8
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +3
Query: 117 AGVRWNRTARGRSDPRALIRTAKSTSL 197
+G WNR+AR R DP +R + SL
Sbjct: 505 SGRAWNRSARARPDPLPSLRFGSTHSL 531
>05_05_0044 - 21819193-21819418,21819531-21820759
Length = 484
Score = 27.9 bits (59), Expect = 9.8
Identities = 18/49 (36%), Positives = 25/49 (51%)
Frame = +2
Query: 74 LKTHDILESAVNKPSGGEVEPHGAGEERPSRPDQNGEINISEEDTNPAI 220
L D+L + V P E+E G E +R +Q E+ +SEE NP I
Sbjct: 348 LSDPDVLGNLV-APVEAEIETEGHAEY--TRTEQRYELAVSEEPNNPLI 393
>05_04_0077 - 17712043-17712246,17712487-17712522,17712746-17712900,
17713431-17713591,17713950-17714110,17714188-17715657,
17715704-17715998,17716461-17717737,17717826-17718137,
17718223-17718356,17718449-17718521,17719994-17720059,
17720748-17720936
Length = 1510
Score = 27.9 bits (59), Expect = 9.8
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Frame = +2
Query: 98 SAVNKPSGGEVEP-HGAGEERPSRPDQNGEINISEEDTNPAIDQEQAGTNVDPVRGR 265
S V + V P HG+G+ R PDQNG+ + + ++N + DQ + + P + R
Sbjct: 1138 SLVEQKVNSHVLPIHGSGDFRRPTPDQNGK-TLPQYNSNQS-DQAKLSSGKHPTQVR 1192
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,676,985
Number of Sequences: 37544
Number of extensions: 476584
Number of successful extensions: 1545
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1479
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1543
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2138915688
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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