Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021226
(792 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_50645| Best HMM Match : Syndecan (HMM E-Value=0.02) 51 1e-06
SB_3979| Best HMM Match : Syndecan (HMM E-Value=0.0017) 39 0.005
SB_22760| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.050
SB_48846| Best HMM Match : Pkinase_Tyr (HMM E-Value=8.1e-16) 34 0.15
SB_59003| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.61
SB_8110| Best HMM Match : AAA (HMM E-Value=0.0032) 31 1.4
SB_23044| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.9
SB_23318| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.9
SB_47097| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.5
SB_56834| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.3
SB_23536| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.3
SB_959| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.3
SB_35605| Best HMM Match : Treacle (HMM E-Value=0.54) 29 4.3
SB_11766| Best HMM Match : Reprolysin (HMM E-Value=1.6e-08) 29 4.3
SB_10302| Best HMM Match : VDE (HMM E-Value=4.4) 29 4.3
SB_51002| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.7
SB_39268| Best HMM Match : Y_phosphatase (HMM E-Value=0) 29 5.7
SB_32109| Best HMM Match : Fz (HMM E-Value=0.0027) 29 5.7
SB_1748| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.7
SB_43997| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.5
SB_10066| Best HMM Match : GPS (HMM E-Value=8.6e-07) 28 7.5
SB_47522| Best HMM Match : HLH (HMM E-Value=1e-17) 28 7.5
SB_52416| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 10.0
SB_43079| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 10.0
SB_32768| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 10.0
SB_26428| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 10.0
SB_16935| Best HMM Match : Cadherin (HMM E-Value=0) 28 10.0
SB_34| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 10.0
>SB_50645| Best HMM Match : Syndecan (HMM E-Value=0.02)
Length = 226
Score = 50.8 bits (116), Expect = 1e-06
Identities = 21/35 (60%), Positives = 29/35 (82%)
Frame = +3
Query: 342 VIGGAVVGLLCAILVVMFIVYRMRKKDEGSYALDE 446
VI VVG +CAI+++ F+VYR+RK+DEGSYAL +
Sbjct: 173 VIAAVVVGGVCAIILIAFLVYRLRKRDEGSYALTD 207
>SB_3979| Best HMM Match : Syndecan (HMM E-Value=0.0017)
Length = 436
Score = 38.7 bits (86), Expect = 0.005
Identities = 19/39 (48%), Positives = 29/39 (74%)
Frame = +3
Query: 330 ILAAVIGGAVVGLLCAILVVMFIVYRMRKKDEGSYALDE 446
IL A++ GA L ++L+V F+VYR++K++EGSY L E
Sbjct: 338 ILIALLAGA----LFSVLLVAFLVYRLKKRNEGSYELTE 372
>SB_22760| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 570
Score = 35.5 bits (78), Expect = 0.050
Identities = 32/108 (29%), Positives = 51/108 (47%), Gaps = 5/108 (4%)
Frame = +3
Query: 165 ALIRTAKST-SLKKTPIRQLTRS--RRALTWILFAAVRSVHHERQAGRQSDQLLRAPGIL 335
A +RT K+ + K P + S ++ WI SV H +QS ++ G+
Sbjct: 430 AKVRTTKAAPTTKPVPTTPMEGSGNNSSMEWI--NTTDSVFHFYTESKQSSD--KSMGVP 485
Query: 336 AAVIGGAVVGLLCAILVVMFIVYRMRKKDEGSY--ALDEPKRSPAAAS 473
A +I AVV + +I + +F+VYR + GS+ A PK +A S
Sbjct: 486 AWIITIAVVAAVISIFITIFLVYRWNTRYSGSFSTASAVPKPEQSAPS 533
>SB_48846| Best HMM Match : Pkinase_Tyr (HMM E-Value=8.1e-16)
Length = 523
Score = 33.9 bits (74), Expect = 0.15
Identities = 18/48 (37%), Positives = 30/48 (62%), Gaps = 3/48 (6%)
Frame = +3
Query: 285 RQAGRQSDQLL---RAPGILAAVIGGAVVGLLCAILVVMFIVYRMRKK 419
R A ++ DQ+L +P AVIGGAV G+L +LV++ ++ R++
Sbjct: 133 RSANKEVDQVLPPHASPQTSGAVIGGAVGGVLLLVLVLLILLVLWRRR 180
>SB_59003| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 605
Score = 31.9 bits (69), Expect = 0.61
Identities = 15/33 (45%), Positives = 20/33 (60%)
Frame = +2
Query: 158 PSRPDQNGEINISEEDTNPAIDQEQAGTNVDPV 256
P PD E N+S+ PAID+EQ GT++ V
Sbjct: 552 PPLPDAKRENNMSQITRRPAIDREQPGTSLATV 584
>SB_8110| Best HMM Match : AAA (HMM E-Value=0.0032)
Length = 1199
Score = 30.7 bits (66), Expect = 1.4
Identities = 25/80 (31%), Positives = 36/80 (45%)
Frame = +1
Query: 475 TGKDTTTASSTLRRLGTKHATCLLVGALIKNEHFPPGRHFDFLFLFSNLRSVSGILKCV* 654
T KD T A+ST +L K A + N+ + F LFS R V GI V
Sbjct: 170 TSKDQTEATST-DKLKQKSAEVIRPEIPAVNQEELAAANKVFNSLFSGSRGVKGISSTVQ 228
Query: 655 LILHIFLPWLFVL*IIQTKQ 714
+I + PW V ++Q ++
Sbjct: 229 IIADMPAPWPTVSHVLQAEE 248
>SB_23044| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2162
Score = 30.3 bits (65), Expect = 1.9
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = +3
Query: 342 VIGGAVVGLLCAILVVMFIVYRMRKKDEGSYA 437
+I G VVG + IL+V+ IV M++ G+Y+
Sbjct: 2105 IIIGVVVGCVALILLVLLIVLLMKRASNGTYS 2136
>SB_23318| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 500
Score = 30.3 bits (65), Expect = 1.9
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = +1
Query: 565 NEHFPPGRHFDFLFLFSNLRSVSG 636
+E+FP GR FD F F+NL+ +G
Sbjct: 133 SEYFPLGRPFDLAFWFNNLKYYAG 156
>SB_47097| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 323
Score = 29.9 bits (64), Expect = 2.5
Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Frame = +3
Query: 240 LTWILFAAVR--SVHHERQAGRQSDQLLRAPGILAAVIGGAVVGLLCAILVVMFIVYRMR 413
+TW A+ SVH R+ R + A ++GG+ + L C ++VV ++ +
Sbjct: 217 VTWKQVRAIHESSVHSTHDGLRREVASNRKTAVTAVIVGGSFLVLFCPVVVVFSLLLTVE 276
Query: 414 KK 419
K
Sbjct: 277 DK 278
>SB_56834| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 552
Score = 29.1 bits (62), Expect = 4.3
Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 3/76 (3%)
Frame = +2
Query: 122 GEVEPHGAGEERPSRPDQNGEINISEEDTNPAIDQE---QAGTNVDPVRGRQKCSS*TPS 292
GE E +G EE + + + EED++ + + E + + VR + + ++ PS
Sbjct: 406 GEDEENGEDEENEENGEDDDDEEEEEEDSDESEESEYLEEQPSRRSTVRPKVRPTA-LPS 464
Query: 293 RKTERSASSRTWHTRR 340
+ RSA+SRT + R
Sbjct: 465 KSGSRSAASRTSRSSR 480
>SB_23536| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 414
Score = 29.1 bits (62), Expect = 4.3
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +3
Query: 402 YRMRKKDEGSYALDEPKRSPAAASYGKGHNNR 497
Y + SY P+RSPAAASY G N++
Sbjct: 275 YSSAPYERSSYG-PPPQRSPAAASYSSGDNDK 305
>SB_959| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 165
Score = 29.1 bits (62), Expect = 4.3
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +2
Query: 149 EERPSRPDQNGEINISEEDTNPAIDQEQAGT 241
+E PS D+ E+ + + T+PA DQE T
Sbjct: 29 DEMPSDSDEESEVYVPADITDPASDQESTTT 59
>SB_35605| Best HMM Match : Treacle (HMM E-Value=0.54)
Length = 776
Score = 29.1 bits (62), Expect = 4.3
Identities = 15/58 (25%), Positives = 28/58 (48%)
Frame = +3
Query: 393 FIVYRMRKKDEGSYALDEPKRSPAAASYGKGHNNREFYAETTRNKTCHVLTSRRSNQE 566
F + R ++ +G +LD+ +R P++ S+ + R+ T + L SR S E
Sbjct: 262 FAMPRKAQECDGLESLDQLERQPSSPSHSRSSGGRQHACRTQTRQATGRLQSRASGME 319
>SB_11766| Best HMM Match : Reprolysin (HMM E-Value=1.6e-08)
Length = 469
Score = 29.1 bits (62), Expect = 4.3
Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Frame = +3
Query: 327 GILAAVIGGAVVGLLCAILVVMFIVYRMRKKDEGSYA-LDEPKRSPAAASYGKGHNNREF 503
G A +IG + G++ I+VV+ V+R+RK + + LD +P H++R
Sbjct: 13 GKSAIIIGSVIAGVVLLIVVVVVAVWRLRKSKKTVFLDLDVISITPKRLHRRSIHSSRTL 72
Query: 504 Y 506
+
Sbjct: 73 H 73
>SB_10302| Best HMM Match : VDE (HMM E-Value=4.4)
Length = 578
Score = 29.1 bits (62), Expect = 4.3
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +2
Query: 149 EERPSRPDQNGEINISEEDTNPAIDQEQAGT 241
+E PS D+ E+ + + T+PA DQE T
Sbjct: 442 DEMPSDSDEESEVYVPADITDPASDQESTTT 472
>SB_51002| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1888
Score = 28.7 bits (61), Expect = 5.7
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +3
Query: 318 RAPGILAAVIGGAVVGLLCAIL-VVMFIVYRMRKKDEGSYALDEPKR 455
R G ++ G V GLL +L +V+FI+YR RK AL +P R
Sbjct: 576 RQTGPSGSIAGAVVGGLLMLVLALVIFILYRRRK------ALQQPNR 616
>SB_39268| Best HMM Match : Y_phosphatase (HMM E-Value=0)
Length = 580
Score = 28.7 bits (61), Expect = 5.7
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = +3
Query: 297 RQSDQLLRAPGILAAVIGGAVVGLLCAILVVMFIVY-RMRKKDEG 428
+ S ++L A I GAV+ +L + V +VY R R+KD G
Sbjct: 210 KTSKEILPATSSPVGAIAGAVIAVLILVAVAGGVVYWRRRQKDAG 254
>SB_32109| Best HMM Match : Fz (HMM E-Value=0.0027)
Length = 263
Score = 28.7 bits (61), Expect = 5.7
Identities = 12/42 (28%), Positives = 24/42 (57%)
Frame = +3
Query: 294 GRQSDQLLRAPGILAAVIGGAVVGLLCAILVVMFIVYRMRKK 419
GR++D + + A V+GG + G LC ++ + + Y + K+
Sbjct: 194 GRRNDADNSSGNVTARVVGGVIAG-LCLVIFAIGLAYYLHKR 234
>SB_1748| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 683
Score = 28.7 bits (61), Expect = 5.7
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +1
Query: 403 TACVRRMKVPMPSTSRREVQRQPRTGKDTT 492
T+C + P P T++ + Q +P+T K TT
Sbjct: 347 TSCQKENNKPRPQTAKGKSQTRPKTAKATT 376
>SB_43997| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1067
Score = 28.3 bits (60), Expect = 7.5
Identities = 14/46 (30%), Positives = 21/46 (45%)
Frame = +2
Query: 134 PHGAGEERPSRPDQNGEINISEEDTNPAIDQEQAGTNVDPVRGRQK 271
PHG + Q ++ +ED NP D+E T VRG ++
Sbjct: 436 PHGTSSPSSHKEFQPAKLLFGQEDCNP--DKEDGATVTPRVRGEER 479
>SB_10066| Best HMM Match : GPS (HMM E-Value=8.6e-07)
Length = 1146
Score = 28.3 bits (60), Expect = 7.5
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = +3
Query: 336 AAVIGGAVVGLLCAILVVMFIVYRMR 413
AA+IGG V G L +L++ ++YR +
Sbjct: 1103 AAIIGGTVGGTLALLLMIGAVIYRSK 1128
>SB_47522| Best HMM Match : HLH (HMM E-Value=1e-17)
Length = 213
Score = 28.3 bits (60), Expect = 7.5
Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 2/62 (3%)
Frame = +2
Query: 62 IFYILKTHDILESAVNKPSGGEVEPHGAGEERPSRPDQNGEINISEEDTNPAI--DQEQA 235
I YI DIL + +P E G + +R D E+N D++ I D E
Sbjct: 115 IHYIAALSDILGKPIPEPEPKEARRDGESRAKRARLDDTQELNSPSGDSSSNIPTDNESE 174
Query: 236 GT 241
G+
Sbjct: 175 GS 176
>SB_52416| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 451
Score = 27.9 bits (59), Expect = 10.0
Identities = 23/67 (34%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
Frame = +3
Query: 129 WNRTARGRSDPRALIRTAKSTSLKK-TPIRQLTRSRRALTWILFAAVRSVHHERQAGRQS 305
W R A R D R +LKK T LT R +L + H +A RQ
Sbjct: 133 WLRRAAQRLDGREAGGVPLKKTLKKSTKADVLTERLRDAGELLRDHPHANTHVARAARQV 192
Query: 306 DQLLRAP 326
D+L+RAP
Sbjct: 193 DELVRAP 199
>SB_43079| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 508
Score = 27.9 bits (59), Expect = 10.0
Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 6/68 (8%)
Frame = +2
Query: 119 GGEVEPHGAGEERP-SRPDQNGEINISEED-----TNPAIDQEQAGTNVDPVRGRQKCSS 280
GGE EP G GE++ ++ D++ E SE D T+ ++ ++ D V+ + K ++
Sbjct: 439 GGEGEPGGTGEDQTNTKGDESSEEKESERDSWVKVTDEDVENAKSEMKEDTVKLQDKAAA 498
Query: 281 *TPSRKTE 304
KT+
Sbjct: 499 IDNGPKTD 506
>SB_32768| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1393
Score = 27.9 bits (59), Expect = 10.0
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = +3
Query: 120 GVRWNRTARGRSDPRALIRTAKSTSLKKT 206
GVR +T GRS P + RT++S S++ T
Sbjct: 813 GVRRRQTMPGRSTPSGVRRTSQSNSVRLT 841
>SB_26428| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 931
Score = 27.9 bits (59), Expect = 10.0
Identities = 18/40 (45%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Frame = +3
Query: 318 RAPGILAAVIGGAVVG--LLCAILVVMFIVYRMRKKDEGS 431
R G VI GAV+ L A+++V IV+R RKK GS
Sbjct: 612 RTSGTHPGVIAGAVIACVLAVAVVIVALIVWR-RKKRPGS 650
>SB_16935| Best HMM Match : Cadherin (HMM E-Value=0)
Length = 2204
Score = 27.9 bits (59), Expect = 10.0
Identities = 16/47 (34%), Positives = 23/47 (48%)
Frame = +2
Query: 107 NKPSGGEVEPHGAGEERPSRPDQNGEINISEEDTNPAIDQEQAGTNV 247
N P G + G+ +E PD NG N + T AID++ T+V
Sbjct: 379 NDPPTGVIFNGGSLDEYSDDPDVNGTRNGTHVGTLTAIDEDAKDTHV 425
>SB_34| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 122
Score = 27.9 bits (59), Expect = 10.0
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = +2
Query: 356 CSRVIMRNPCGHVHSI 403
C+R+ RNPC H H++
Sbjct: 9 CTRIRNRNPCSHTHTL 24
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,126,193
Number of Sequences: 59808
Number of extensions: 533111
Number of successful extensions: 1774
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 1566
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1767
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2179815638
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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