Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021226
         (792 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g21630.1 68416.m02728 protein kinase family protein contains ...    36   0.041
At5g43100.1 68418.m05261 aspartyl protease family protein low si...    33   0.29 
At2g18470.1 68415.m02151 protein kinase family protein contains ...    31   0.88 
At5g14210.1 68418.m01660 leucine-rich repeat transmembrane prote...    30   1.5  
At4g23220.1 68417.m03349 protein kinase family protein contains ...    30   2.0  
At4g36180.1 68417.m05148 leucine-rich repeat family protein cont...    29   2.7  
At3g23630.1 68416.m02972 adenylate isopentenyltransferase 7 / cy...    29   3.5  
At5g38990.1 68418.m04717 protein kinase family protein contains ...    29   4.7  
At1g49520.1 68414.m05550 SWIB complex BAF60b domain-containing p...    29   4.7  
At3g51550.1 68416.m05645 protein kinase family protein contains ...    28   6.2  
At3g10680.1 68416.m01284 heat shock protein-related contains wea...    28   6.2  

>At3g21630.1 68416.m02728 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 617

 Score = 35.5 bits (78), Expect = 0.041
 Identities = 14/33 (42%), Positives = 25/33 (75%)
 Frame = +3

Query: 327 GILAAVIGGAVVGLLCAILVVMFIVYRMRKKDE 425
           G+ A VI G V+G++ A+L+++FIVY   +K++
Sbjct: 229 GVGAGVIAGIVIGVIVALLLILFIVYYAYRKNK 261


>At5g43100.1 68418.m05261 aspartyl protease family protein low
           similarity to CND41, chloroplast nucleoid DNA binding
           protein [Nicotiana tabacum] GI:2541876; contains Pfam
           profile PF00026: Eukaryotic aspartyl protease
          Length = 631

 Score = 32.7 bits (71), Expect = 0.29
 Identities = 13/35 (37%), Positives = 26/35 (74%), Gaps = 1/35 (2%)
 Frame = +3

Query: 333 LAAVIGGAVVGLL-CAILVVMFIVYRMRKKDEGSY 434
           L  V+GGA++ LL  ++++ + +V+R RK++E +Y
Sbjct: 575 LLGVVGGAMISLLVTSVMIKLALVWRRRKQEEATY 609


>At2g18470.1 68415.m02151 protein kinase family protein contains
           Pfam PF00069: Protein kinase domain
          Length = 633

 Score = 31.1 bits (67), Expect = 0.88
 Identities = 16/52 (30%), Positives = 28/52 (53%)
 Frame = +3

Query: 339 AVIGGAVVGLLCAILVVMFIVYRMRKKDEGSYALDEPKRSPAAASYGKGHNN 494
           A+I G +VG    ++V++ +  R +KK + S+   EP +      YG  +NN
Sbjct: 151 AIIVGVLVGAGLLMIVLIIVCLRRKKKRKDSF-YPEPMKGNQYQYYGNNNNN 201


>At5g14210.1 68418.m01660 leucine-rich repeat transmembrane protein
           kinase, putative 
          Length = 812

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 14/28 (50%), Positives = 21/28 (75%)
 Frame = +3

Query: 318 RAPGILAAVIGGAVVGLLCAILVVMFIV 401
           R  GIL AVIGGAV+ L+  +LV++ ++
Sbjct: 392 RKVGILIAVIGGAVLVLVFFVLVILLLL 419


>At4g23220.1 68417.m03349 protein kinase family protein contains
           Pfam PF00069: Protein kinase domain
          Length = 542

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = +3

Query: 327 GILAAVIGGAVVGLLCAILVVMFIVYRMRKKDEGS 431
           GI+ A+I   V+ +   +L + F+VYR RK  +GS
Sbjct: 163 GIVWAIIIPTVIVVFLVLLALGFVVYRRRKSYQGS 197


>At4g36180.1 68417.m05148 leucine-rich repeat family protein
           contains protein kinase domain, Pfam:PF00069; contains
           leucine-rich repeats, Pfam:PF00560
          Length = 1136

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 16/50 (32%), Positives = 24/50 (48%)
 Frame = +3

Query: 330 ILAAVIGGAVVGLLCAILVVMFIVYRMRKKDEGSYALDEPKRSPAAASYG 479
           I+ A IG  ++ L C   V   + +R + K + +    E KRSP   S G
Sbjct: 756 IVMAAIGAFLLSLFCCFYVYTLLKWRKKLKQQSTTG--EKKRSPGRTSAG 803


>At3g23630.1 68416.m02972 adenylate isopentenyltransferase 7 /
           cytokinin synthase (IPT7) identical to adenylate
           isopentenyltransferase (IPT7) [Arabidopsis thaliana]
           GI:14279066
          Length = 329

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = -3

Query: 70  IENQFYNNNKTLKNNSVRH 14
           I ++FYNNN  LKN+ V H
Sbjct: 293 IVDKFYNNNNQLKNDDVEH 311


>At5g38990.1 68418.m04717 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 880

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 17/50 (34%), Positives = 29/50 (58%)
 Frame = +3

Query: 330 ILAAVIGGAVVGLLCAILVVMFIVYRMRKKDEGSYALDEPKRSPAAASYG 479
           I+ AV+G AV  L   +LVV+ +V + +KK   S ++D   +    +S+G
Sbjct: 441 IIIAVVGSAVA-LAFFVLVVVLVVMKRKKKSNES-SVDTTNKPSTNSSWG 488


>At1g49520.1 68414.m05550 SWIB complex BAF60b domain-containing
           protein contains Pfam profile PF02201: BAF60b domain of
           the SWIB complex
          Length = 372

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = +2

Query: 212 PAIDQEQAGTNVDPVRGRQKCSS*TPSRKTERSASSRT 325
           P + +++AGT  DP +G+QK    T     E +    T
Sbjct: 327 PLVQEDEAGTTNDPEKGKQKMKMETDEDNDESNEEKAT 364


>At3g51550.1 68416.m05645 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 895

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 3/63 (4%)
 Frame = +3

Query: 339 AVIGGAVVGLLCAILVVMFIV---YRMRKKDEGSYALDEPKRSPAAASYGKGHNNREFYA 509
           A+I GA  G +   L++ F V   YR RK+ +   A D        + YG  H+      
Sbjct: 447 AIIAGAASGAVVLALIIGFCVFGAYRRRKRGDYQPASDATSGWLPLSLYGNSHSAGSAKT 506

Query: 510 ETT 518
            TT
Sbjct: 507 NTT 509


>At3g10680.1 68416.m01284 heat shock protein-related contains weak
           similarity to Pfam profile PF00011: Hsp20/alpha
           crystallin family
          Length = 490

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 13/54 (24%), Positives = 26/54 (48%)
 Frame = +2

Query: 107 NKPSGGEVEPHGAGEERPSRPDQNGEINISEEDTNPAIDQEQAGTNVDPVRGRQ 268
           N+   G   P+G+   R    ++  ++  S+E T P +++E   T    V G++
Sbjct: 132 NQEKSGGPGPNGSTLGRKKALEEEKQVGTSQEKTTPTLNEEAPKTYKSVVEGKR 185


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,159,182
Number of Sequences: 28952
Number of extensions: 362574
Number of successful extensions: 1158
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1157
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1785055200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)