Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021223
         (739 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1773.15 |||membrane transporter|Schizosaccharomyces pombe|ch...    31   0.17 
SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein Hsp60...    28   1.6  
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy...    27   2.1  
SPCC576.15c |ksg1||serine/threonine protein kinase Ksg1|Schizosa...    27   3.7  
SPAC227.07c |pab1||protein phosphatase regulatory subunit Pab1|S...    26   4.9  
SPBC3D6.10 |apn2||AP-endonuclease Apn2|Schizosaccharomyces pombe...    26   6.4  
SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces ...    25   8.5  
SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces...    25   8.5  

>SPBC1773.15 |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 497

 Score = 31.1 bits (67), Expect = 0.17
 Identities = 16/57 (28%), Positives = 31/57 (54%)
 Frame = -2

Query: 438 IEKSILQSMNLKSGSWILSGLCMGVKCRAASA*TPYWSRVCFGLESHLFLVGHQRAW 268
           I+KS+ + + LK+  W++  LC+    +     T  +S +  G+ + L +VG+Q  W
Sbjct: 36  IDKSLNRKLKLKTDLWVMPLLCLISAFQYMDKSTSNYSSI-MGIRTDLNMVGNQYNW 91


>SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein
           Hsp60|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 582

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +3

Query: 159 DLNEKRTMVVKGDMHIGGVMLKLTESFGKE 248
           ++++  T+   GD HIG ++ K  E  GKE
Sbjct: 174 EISQVATISANGDTHIGELLAKAMERVGKE 203


>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 433

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 13/47 (27%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
 Frame = -2

Query: 507 SDSSSECL-IPRFLHSCITALNVSIEKSILQSMNLKSGSWILSGLCM 370
           +++SS  L IP+   +CI+  +V I  S+L ++ +  G+ ++ G  +
Sbjct: 318 TNTSSRILGIPQLFQNCISECDVDIRASLLNNVIVCGGTSLMQGFSL 364


>SPCC576.15c |ksg1||serine/threonine protein kinase
           Ksg1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 592

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = +3

Query: 111 GEIVGDGSWNLTIYVTDLNEKRTMVVK 191
           GEI+G+GS++  +  T+ + KR   +K
Sbjct: 102 GEILGEGSYSTVLTATENSTKREYAIK 128


>SPAC227.07c |pab1||protein phosphatase regulatory subunit
           Pab1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 463

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = +2

Query: 302 LSRPKHTLDQYGVHADAA-LHFTPMHKPLRIQLPDLRFIDCKIDFSIDTFS 451
           LSR   TL  + V+ + A +   P+H  LR +L DL   DC  D    TFS
Sbjct: 300 LSRDYLTLKIWDVNMEKAPVKTIPLHDVLRSKLCDLYENDCIFDKFECTFS 350


>SPBC3D6.10 |apn2||AP-endonuclease Apn2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 523

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 12/38 (31%), Positives = 23/38 (60%)
 Frame = +1

Query: 538 QNYQNLKEAKRIKNTPAPDTNTFIAATRGSSNSLDRSN 651
           Q++ ++K+ K   N+P    N   +A+ GSS ++ R+N
Sbjct: 343 QHFNSMKKNKN--NSPTQSENVSASASSGSSPTVSRAN 378


>SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 644

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 12/48 (25%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
 Frame = +3

Query: 120 VGDGSWNLTIYVTDLNEKRTMVVKGDMHIGGVML--KLTESFGKEFKK 257
           +G G++++++   +          GD H+GG     +L   F +EFK+
Sbjct: 198 LGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDSRLVNHFAQEFKR 245


>SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1441

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 5/43 (11%)
 Frame = +3

Query: 117  IVGDGSWNLTIYVTDLNEKRT-----MVVKGDMHIGGVMLKLT 230
            +V D S NL +   D     +     +V +GD HIG V+  +T
Sbjct: 1270 VVADTSGNLRLLAYDPENPESHSGERLVTRGDFHIGNVITAMT 1312


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,839,057
Number of Sequences: 5004
Number of extensions: 55703
Number of successful extensions: 175
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)