Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021223
         (739 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0486 - 18634813-18635168,18635258-18638726                       32   0.55 
07_03_0461 - 18433138-18433257,18433627-18433699,18434459-18434646     30   2.2  
03_05_1091 + 30322035-30322739,30322861-30324043,30324114-303251...    29   2.9  
03_01_0574 + 4243019-4244284                                           29   3.9  

>07_03_0486 - 18634813-18635168,18635258-18638726
          Length = 1274

 Score = 31.9 bits (69), Expect = 0.55
 Identities = 20/60 (33%), Positives = 29/60 (48%)
 Frame = +3

Query: 87   ELVKMLADGEIVGDGSWNLTIYVTDLNEKRTMVVKGDMHIGGVMLKLTESFGKEFKKIGR 266
            E    L+D   +G G    T+Y  +L    T+ VK   H+   ML   +SF +E K +GR
Sbjct: 956  EATANLSDQFAIGSGGSG-TVYRAELPTGETVAVKRIAHMDSDMLLHDKSFAREVKILGR 1014


>07_03_0461 - 18433138-18433257,18433627-18433699,18434459-18434646
          Length = 126

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
 Frame = +3

Query: 513 SARGVTSKTELSKSERS*KNKEHSGSGHEY--IHSSDKRLFE*LG*IKWPVSRYPPPP 680
           SARG+ +   L K+ +   + E  G G+++  +H+  +   E       P S YPPPP
Sbjct: 18  SARGLDNFNVLQKAAKKLLHDEAKGCGNDFTLLHTMLEPKIESQKRFSMPHSSYPPPP 75


>03_05_1091 + 30322035-30322739,30322861-30324043,30324114-30325105,
            30326409-30326798,30326896-30330060
          Length = 2144

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +2

Query: 290  RNKWLSRPKHT-LDQYGVHADAALHFTPMHKPLRIQLPDL 406
            R + +S+P +T + Q+  H   AL F P HK  R+   DL
Sbjct: 1543 RMQAMSKPTYTAITQHAKHGKPALVFVPTHKHARLTAVDL 1582


>03_01_0574 + 4243019-4244284
          Length = 421

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 16/41 (39%), Positives = 23/41 (56%)
 Frame = +3

Query: 93  VKMLADGEIVGDGSWNLTIYVTDLNEKRTMVVKGDMHIGGV 215
           V  L DG+ +   SWN    VT+L EK+T  + GD +  G+
Sbjct: 162 VVRLEDGDYLELVSWNPNWAVTEL-EKKTAALTGDANANGI 201


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,901,970
Number of Sequences: 37544
Number of extensions: 411459
Number of successful extensions: 1305
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1255
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1304
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1945321620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)