Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021223
         (739 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_36075| Best HMM Match : CCD (HMM E-Value=4.3)                      124   6e-29
SB_9942| Best HMM Match : CCD (HMM E-Value=4.3)                       124   6e-29
SB_6651| Best HMM Match : Death (HMM E-Value=2.2e-18)                  31   0.74 
SB_74| Best HMM Match : No HMM Matches (HMM E-Value=.)                 31   0.97 
SB_39432| Best HMM Match : DTHCT (HMM E-Value=3.9)                     30   1.7  
SB_28106| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.1  

>SB_36075| Best HMM Match : CCD (HMM E-Value=4.3)
          Length = 146

 Score =  124 bits (300), Expect = 6e-29
 Identities = 52/87 (59%), Positives = 64/87 (73%)
 Frame = +2

Query: 248 VQEDWSDHALWWPTRNKWLSRPKHTLDQYGVHADAALHFTPMHKPLRIQLPDLRFIDCKI 427
           +  DWSDH LWWP R +WL +P+ TLD  GV  DA LHFTP+HK +R+QLPDL+F++  +
Sbjct: 46  ISADWSDHGLWWPQRRQWLLKPRITLDTCGVQGDAKLHFTPIHKKVRVQLPDLQFVELSM 105

Query: 428 DFSIDTFSAVIQLCKNLGIRHSEELSL 508
           DFS   F AV +LC  LGIRH EELSL
Sbjct: 106 DFSKKVFVAVQELCAELGIRHPEELSL 132



 Score = 37.9 bits (84), Expect = 0.008
 Identities = 14/34 (41%), Positives = 24/34 (70%)
 Frame = +3

Query: 132 SWNLTIYVTDLNEKRTMVVKGDMHIGGVMLKLTE 233
           +WNL++++T L+ ++ + V G  HIG +ML L E
Sbjct: 9   NWNLSVFITSLSTEKPVEVTGQTHIGKLMLDLVE 42


>SB_9942| Best HMM Match : CCD (HMM E-Value=4.3)
          Length = 146

 Score =  124 bits (300), Expect = 6e-29
 Identities = 52/87 (59%), Positives = 64/87 (73%)
 Frame = +2

Query: 248 VQEDWSDHALWWPTRNKWLSRPKHTLDQYGVHADAALHFTPMHKPLRIQLPDLRFIDCKI 427
           +  DWSDH LWWP R +WL +P+ TLD  GV  DA LHFTP+HK +R+QLPDL+F++  +
Sbjct: 46  ISADWSDHGLWWPQRRQWLLKPRITLDTCGVQGDAKLHFTPIHKKVRVQLPDLQFVELSM 105

Query: 428 DFSIDTFSAVIQLCKNLGIRHSEELSL 508
           DFS   F AV +LC  LGIRH EELSL
Sbjct: 106 DFSKKVFVAVQELCAELGIRHPEELSL 132



 Score = 37.9 bits (84), Expect = 0.008
 Identities = 14/34 (41%), Positives = 24/34 (70%)
 Frame = +3

Query: 132 SWNLTIYVTDLNEKRTMVVKGDMHIGGVMLKLTE 233
           +WNL++++T L+ ++ + V G  HIG +ML L E
Sbjct: 9   NWNLSVFITSLSTEKPVEVTGQTHIGKLMLDLVE 42


>SB_6651| Best HMM Match : Death (HMM E-Value=2.2e-18)
          Length = 466

 Score = 31.5 bits (68), Expect = 0.74
 Identities = 24/86 (27%), Positives = 39/86 (45%)
 Frame = +3

Query: 81  LNELVKMLADGEIVGDGSWNLTIYVTDLNEKRTMVVKGDMHIGGVMLKLTESFGKEFKKI 260
           +N +VK + + E++   +   TI+  + N+K   +V  D + GG+  KL   F KE   I
Sbjct: 366 MNRIVKKVENAEVIPPSAVGATIFEDEKNKKAIGMVTRDSN-GGLKAKL---FTKE--DI 419

Query: 261 GRTMPSGGRLETNGSPDQNTPWTSTE 338
                  G  +     D+  P TS E
Sbjct: 420 SNLTTGNGEKKQTTETDEKQPSTSCE 445


>SB_74| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 711

 Score = 31.1 bits (67), Expect = 0.97
 Identities = 18/87 (20%), Positives = 36/87 (41%)
 Frame = +3

Query: 123 GDGSWNLTIYVTDLNEKRTMVVKGDMHIGGVMLKLTESFGKEFKKIGRTMPSGGRLETNG 302
           GDG++ ++         + +V   + +IGG    +  +    +KK+G+ + + G  E  G
Sbjct: 384 GDGTYTVSYEPNQRGNHKIIVTIRNRNIGGSPFSVNVTGRMNYKKLGKAIRTFGS-EGAG 442

Query: 303 SPDQNTPWTSTEFTRTPPYTSRPCTNH 383
             + + PW          +    C NH
Sbjct: 443 GGEFSIPWAVAIDEENECFIVTDCNNH 469


>SB_39432| Best HMM Match : DTHCT (HMM E-Value=3.9)
          Length = 198

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = +1

Query: 514 PLEASHLKQNYQNLKEAKRIKNTPAPDT-NTFIAATRGSSNSLD 642
           PL  ++ ++N  N  E+K  K TPAP+T NT I   + S  + D
Sbjct: 85  PLTENNTERNMPNEAESKHTKQTPAPNTLNTPIKKPQESLENSD 128


>SB_28106| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1206

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 10/20 (50%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
 Frame = +3

Query: 321 PWTSTEF-TRTPPYTSRPCT 377
           PW++    TR PP ++RPCT
Sbjct: 879 PWSNRHLDTRAPPISARPCT 898


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,972,687
Number of Sequences: 59808
Number of extensions: 445101
Number of successful extensions: 1229
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1229
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1986074805
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)