Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021222
(693 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity fac... 28 1.1
SPBC1271.01c |pof13||F-box protein Pof13|Schizosaccharomyces pom... 28 1.5
SPAC20G8.01 |cdc17||ATP-dependent DNA ligase Cdc17|Schizosacchar... 27 2.6
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch... 26 4.5
SPCC576.14 |||diphthine synthase |Schizosaccharomyces pombe|chr ... 26 5.9
SPBC19C7.09c |uve1|uvde|endonuclease Uve1 |Schizosaccharomyces p... 26 5.9
SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces pomb... 25 7.9
SPCC622.14 |||GTPase activating protein |Schizosaccharomyces pom... 25 7.9
>SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity factor
complex subunit, Fip1 homolog |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 344
Score = 28.3 bits (60), Expect = 1.1
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +2
Query: 380 GPSHAKGAHRTPLEAHQNGAETTRGQPAPPAHH 478
G +HA+ H P ++ NGA T PP++H
Sbjct: 277 GMTHAQPTHN-PTSSYGNGASTNYNASRPPSNH 308
>SPBC1271.01c |pof13||F-box protein Pof13|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 396
Score = 27.9 bits (59), Expect = 1.5
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = +2
Query: 158 ISRTPHYTRRRDVGDAETATLLPLRLAPHAVGMLHEFSEAVCRGCVN 298
ISR P + + E A L L+ P + L E+ + +CR C++
Sbjct: 254 ISRCPLNACKIAGQETELADLFSLQKVPACIYCLREWKKPICRYCID 300
>SPAC20G8.01 |cdc17||ATP-dependent DNA ligase
Cdc17|Schizosaccharomyces pombe|chr 1|||Manual
Length = 768
Score = 27.1 bits (57), Expect = 2.6
Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 3/54 (5%)
Frame = +3
Query: 12 LLCSGNKQLSSAKSNVKFCVFICDYHGDSVFSRRH---NKSVTIFKRNEENRSL 164
+L KQ+S + F C+Y D ++ H + +F RN EN S+
Sbjct: 391 MLAKPTKQISEVLNTFDQAAFTCEYKYDGERAQVHFTEDGKFYVFSRNSENMSV 444
>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
Y|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1002
Score = 26.2 bits (55), Expect = 4.5
Identities = 19/79 (24%), Positives = 29/79 (36%), Gaps = 1/79 (1%)
Frame = +2
Query: 251 GMLHEFSEAVCRGCVNYEGADRIEVVLETARQLKRAHGFQEGRGPSHAK-GAHRTPLEAH 427
G H+ A +G ++ + V + R ++ P+H + G H P H
Sbjct: 154 GKHHKGKHAKGKGKKSHPKPEDDSVFFDDERPKHHEFDDEDREFPAHHEPGEHMPPPPMH 213
Query: 428 QNGAETTRGQPAPPAHHTP 484
E P PP HH P
Sbjct: 214 HKPGEH---MPPPPMHHEP 229
Score = 25.8 bits (54), Expect = 5.9
Identities = 12/32 (37%), Positives = 12/32 (37%)
Frame = +2
Query: 389 HAKGAHRTPLEAHQNGAETTRGQPAPPAHHTP 484
H G H P H E P PP HH P
Sbjct: 214 HKPGEHMPPPPMHHEPGEH---MPPPPMHHEP 242
Score = 25.8 bits (54), Expect = 5.9
Identities = 12/32 (37%), Positives = 12/32 (37%)
Frame = +2
Query: 389 HAKGAHRTPLEAHQNGAETTRGQPAPPAHHTP 484
H G H P H E P PP HH P
Sbjct: 227 HEPGEHMPPPPMHHEPGEH---MPPPPMHHEP 255
Score = 25.8 bits (54), Expect = 5.9
Identities = 12/32 (37%), Positives = 12/32 (37%)
Frame = +2
Query: 389 HAKGAHRTPLEAHQNGAETTRGQPAPPAHHTP 484
H G H P H E P PP HH P
Sbjct: 240 HEPGEHMPPPPMHHEPGEH---MPPPPMHHEP 268
Score = 25.8 bits (54), Expect = 5.9
Identities = 12/32 (37%), Positives = 12/32 (37%)
Frame = +2
Query: 389 HAKGAHRTPLEAHQNGAETTRGQPAPPAHHTP 484
H G H P H E P PP HH P
Sbjct: 253 HEPGEHMPPPPMHHEPGEH---MPPPPMHHEP 281
Score = 25.8 bits (54), Expect = 5.9
Identities = 12/32 (37%), Positives = 12/32 (37%)
Frame = +2
Query: 389 HAKGAHRTPLEAHQNGAETTRGQPAPPAHHTP 484
H G H P H E P PP HH P
Sbjct: 266 HEPGEHMPPPPMHHEPGEH---MPPPPMHHEP 294
Score = 25.8 bits (54), Expect = 5.9
Identities = 12/32 (37%), Positives = 12/32 (37%)
Frame = +2
Query: 389 HAKGAHRTPLEAHQNGAETTRGQPAPPAHHTP 484
H G H P H E P PP HH P
Sbjct: 279 HEPGEHMPPPPMHHEPGEH---MPPPPMHHEP 307
Score = 25.8 bits (54), Expect = 5.9
Identities = 12/32 (37%), Positives = 12/32 (37%)
Frame = +2
Query: 389 HAKGAHRTPLEAHQNGAETTRGQPAPPAHHTP 484
H G H P H E P PP HH P
Sbjct: 292 HEPGEHMPPPPMHHEPGEH---MPPPPMHHEP 320
Score = 25.8 bits (54), Expect = 5.9
Identities = 12/32 (37%), Positives = 12/32 (37%)
Frame = +2
Query: 389 HAKGAHRTPLEAHQNGAETTRGQPAPPAHHTP 484
H G H P H E P PP HH P
Sbjct: 305 HEPGEHMPPPPMHHEPGEH---MPPPPMHHEP 333
>SPCC576.14 |||diphthine synthase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 283
Score = 25.8 bits (54), Expect = 5.9
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = +2
Query: 464 PPAHHTPTVGFTLHHHDLRLVQAFWLNME 550
PP H VG +H +L ++A+ +N+E
Sbjct: 243 PPLHSVVLVGRDVHDLELEFLRAYAVNLE 271
>SPBC19C7.09c |uve1|uvde|endonuclease Uve1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 599
Score = 25.8 bits (54), Expect = 5.9
Identities = 13/33 (39%), Positives = 15/33 (45%)
Frame = -3
Query: 475 VSWRCRLSSCCFCSILMGF*GRTVCSFCMRRTT 377
+ WR RL C +IL R CS R TT
Sbjct: 244 IPWRGRLGYACLNTILRSMKERVFCSRTCRITT 276
>SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1379
Score = 25.4 bits (53), Expect = 7.9
Identities = 15/62 (24%), Positives = 29/62 (46%)
Frame = +3
Query: 27 NKQLSSAKSNVKFCVFICDYHGDSVFSRRHNKSVTIFKRNEENRSLALRTTPGGEMSVMQ 206
++Q SA + +CD H S FS ++ + + +E S+ L +PG +S+
Sbjct: 541 SQQTESASKSSSNISEMCDSHPPSNFSISASQQASKDRFSEATSSIDLDLSPGRSLSLAS 600
Query: 207 KR 212
+
Sbjct: 601 SK 602
>SPCC622.14 |||GTPase activating protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 309
Score = 25.4 bits (53), Expect = 7.9
Identities = 7/24 (29%), Positives = 14/24 (58%)
Frame = +3
Query: 189 EMSVMQKRQHCYLCDLPRMPWACC 260
+++ + + + C+ CD P WA C
Sbjct: 7 QLTRLPENKKCFDCDAPNPQWASC 30
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,551,565
Number of Sequences: 5004
Number of extensions: 49019
Number of successful extensions: 142
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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