Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021222
(693 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_02_0637 - 12491706-12492575,12492580-12492657 34 0.093
12_01_0831 - 7688342-7688772,7690678-7692610,7693142-7693915,769... 30 2.0
12_02_0674 - 21745321-21746223,21746229-21747608 29 3.5
06_01_0887 + 6803937-6804030,6804101-6804204 29 4.6
02_03_0172 + 15965342-15965711,15967757-15967849,15967976-159680... 29 4.6
10_08_0626 + 19375760-19375868,19376229-19376317,19376846-193770... 28 6.1
06_02_0155 + 12380452-12381012 28 6.1
01_06_1063 + 34194853-34195671 28 6.1
12_02_0046 + 12830974-12832386 28 8.1
06_03_0505 + 21545547-21545813,21546075-21546167,21546535-215467... 28 8.1
04_03_0306 + 14136338-14136686,14137408-14137442,14137701-141377... 28 8.1
03_06_0338 + 33240111-33240860,33241248-33241536,33242494-33242621 28 8.1
>02_02_0637 - 12491706-12492575,12492580-12492657
Length = 315
Score = 34.3 bits (75), Expect = 0.093
Identities = 18/52 (34%), Positives = 24/52 (46%)
Frame = +1
Query: 367 PRRSWSVACKRSTPYALRSPSKWSRNNKRTTCTSSSPYTDGWFYVTPSRPTA 522
P SW + S P R+P R+ R T T+ SP+ W TP PT+
Sbjct: 94 PASSWICGTEGSPPTRSRTPRSSRRSPARATSTTHSPFCHSW-RTTPWLPTS 144
>12_01_0831 -
7688342-7688772,7690678-7692610,7693142-7693915,
7694019-7694142,7696084-7696189,7696346-7696532
Length = 1184
Score = 29.9 bits (64), Expect = 2.0
Identities = 18/51 (35%), Positives = 22/51 (43%)
Frame = -1
Query: 399 PFACDGPRPSWKP*ARFSCLAVSRTTSIRSAPS*FTHPRHTASENSCNMPT 247
PFA P PSW+P S ++ S S T PR + S S M T
Sbjct: 178 PFALQPPTPSWRPSTPPSAKTLTPPRRSPSPASTLTPPRRSPSPASRRMST 228
>12_02_0674 - 21745321-21746223,21746229-21747608
Length = 760
Score = 29.1 bits (62), Expect = 3.5
Identities = 19/47 (40%), Positives = 24/47 (51%)
Frame = +1
Query: 388 ACKRSTPYALRSPSKWSRNNKRTTCTSSSPYTDGWFYVTPSRPTASA 528
ACK ST + +P+ +S N T TS+ P T SRP ASA
Sbjct: 706 ACKFSTSTSTFTPTSFS--NDLTASTSTFPTTTRLIPTATSRPIASA 750
>06_01_0887 + 6803937-6804030,6804101-6804204
Length = 65
Score = 28.7 bits (61), Expect = 4.6
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = +3
Query: 12 LLCSGNKQLSSAKSNVKFC 68
L+CSG K+L+S+ N KFC
Sbjct: 27 LMCSGYKELASSLRNKKFC 45
>02_03_0172 +
15965342-15965711,15967757-15967849,15967976-15968060,
15968749-15968824,15968992-15969120,15969473-15969571,
15969661-15969762,15970257-15970415,15970507-15970602,
15971497-15971647,15971782-15971893,15972004-15972074,
15972548-15972984,15973421-15973492,15973713-15973810,
15974350-15974425,15975512-15975634,15975776-15975844
Length = 805
Score = 28.7 bits (61), Expect = 4.6
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +2
Query: 440 ETTRGQPAPPAHHTPTVGFTLHHHDLRLVQAFW 538
+ T G HH P GF ++H + RL++ FW
Sbjct: 375 DVTIGFVKDAKHHIPIQGFNVYHKN-RLIKPFW 406
>10_08_0626 +
19375760-19375868,19376229-19376317,19376846-19377016,
19377347-19377472
Length = 164
Score = 28.3 bits (60), Expect = 6.1
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
Frame = +1
Query: 466 SSSPYTDGWFY-VTPSRPTASAGLL--AEYGSRRDEHE 570
+SSPY DGW V PS P+ LL A+Y +E +
Sbjct: 125 NSSPYEDGWMIKVKPSSPSELDALLDPAKYTKHCEEED 162
>06_02_0155 + 12380452-12381012
Length = 186
Score = 28.3 bits (60), Expect = 6.1
Identities = 13/34 (38%), Positives = 15/34 (44%)
Frame = +2
Query: 380 GPSHAKGAHRTPLEAHQNGAETTRGQPAPPAHHT 481
GP+ G H+ H GA G APPA T
Sbjct: 28 GPNDGDGGHKPSPPPHAGGAVNGNGGAAPPAPAT 61
>01_06_1063 + 34194853-34195671
Length = 272
Score = 28.3 bits (60), Expect = 6.1
Identities = 16/32 (50%), Positives = 17/32 (53%)
Frame = +2
Query: 407 RTPLEAHQNGAETTRGQPAPPAHHTPTVGFTL 502
RTPL GA TT Q PP+ HTP TL
Sbjct: 11 RTPL----GGAATTPDQLPPPSPHTPRPAITL 38
>12_02_0046 + 12830974-12832386
Length = 470
Score = 27.9 bits (59), Expect = 8.1
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = +2
Query: 422 AHQNGAETTRGQPAPPAHHTP 484
AHQ A T +PAPP H P
Sbjct: 160 AHQESAALTPQEPAPPLAHAP 180
>06_03_0505 +
21545547-21545813,21546075-21546167,21546535-21546747,
21548933-21549124,21549217-21550197
Length = 581
Score = 27.9 bits (59), Expect = 8.1
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = +3
Query: 120 KSVTIFKRNEENRSLALRTTPGGEMSVMQKRQHCYLCDLPRMP 248
+S+ I R + N SLA TPG + +HC LP +P
Sbjct: 191 QSLLINGRGQFNCSLAAAHTPGAKQCAAAGNRHCAPVILPVLP 233
>04_03_0306 +
14136338-14136686,14137408-14137442,14137701-14137778,
14138046-14138124,14138731-14138823,14139472-14139556,
14140270-14140345,14140669-14140794,14141039-14141137,
14141238-14141339,14141561-14141671,14141809-14141904,
14142488-14142539,14142624-14142735,14142879-14142943,
14144124-14144521,14145236-14145330,14145989-14146015,
14146081-14146156,14146368-14146421,14146741-14146863,
14146955-14147023
Length = 799
Score = 27.9 bits (59), Expect = 8.1
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +2
Query: 437 AETTRGQPAPPAHHTPTVGFTLHHHDLRLVQAFW 538
A+ T G HH GF ++H + RL++ FW
Sbjct: 414 ADVTIGFVKDAKHHVDVQGFNVYHKN-RLIKPFW 446
>03_06_0338 + 33240111-33240860,33241248-33241536,33242494-33242621
Length = 388
Score = 27.9 bits (59), Expect = 8.1
Identities = 12/41 (29%), Positives = 17/41 (41%)
Frame = +2
Query: 383 PSHAKGAHRTPLEAHQNGAETTRGQPAPPAHHTPTVGFTLH 505
P H + + + E + P P AHH PT +T H
Sbjct: 155 PGHDRAPTSAAPPSPAHAPELKKPPPPPEAHHRPTKSYTGH 195
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,121,732
Number of Sequences: 37544
Number of extensions: 374791
Number of successful extensions: 1232
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1231
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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