Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021222
         (693 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33597| Best HMM Match : No HMM Matches (HMM E-Value=.)              52   3e-07
SB_58854| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.7  
SB_41790| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.7  
SB_1787| Best HMM Match : Peptidase_S9 (HMM E-Value=1.5e-08)           29   4.7  
SB_31773| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.3  
SB_11299| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.3  

>SB_33597| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 609

 Score = 52.4 bits (120), Expect = 3e-07
 Identities = 30/78 (38%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
 Frame = +2

Query: 239 PHAV-GMLHEFSEAVCRGCVNYEGADRIEVVLETARQLKRAHGFQEGRGPSHAKGAHRTP 415
           PH+   +LH+FSE +CRGC NYEGA+RIE ++  +R L++     E R   H  G     
Sbjct: 16  PHSPWAILHDFSEPICRGCCNYEGAERIEDIIHYSRLLRKNWEKSE-RNAQH--GVKNDR 72

Query: 416 LEAHQNGAETTRGQPAPP 469
           L +  +   +T   P+PP
Sbjct: 73  LNSTGSSVSST---PSPP 87



 Score = 39.5 bits (88), Expect = 0.003
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = +3

Query: 207 KRQHCYLCDLPRMPWACCMSFQKQCVEG 290
           +RQHC+LCDLP  PWA    F +    G
Sbjct: 6   QRQHCFLCDLPHSPWAILHDFSEPICRG 33


>SB_58854| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 222

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
 Frame = +2

Query: 389 HAKGAHRTPLE-AHQNGAE--TTRGQPAPPAHHTPT 487
           H + AHRT  +  H   A   TT+ QP  PAH T T
Sbjct: 35  HTEPAHRTSTQNQHTEPAHRTTTQNQPTEPAHRTTT 70


>SB_41790| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 121

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 16/50 (32%), Positives = 24/50 (48%)
 Frame = +2

Query: 428 QNGAETTRGQPAPPAHHTPTVGFTLHHHDLRLVQAFWLNMEVEETNTRVD 577
           Q G E  +  P PPA     V    HH DL+L +   +N  ++E   +V+
Sbjct: 25  QPGVEGHQVHPVPPALGGILVESLHHHQDLQLRKEIAVNPGIQENPEKVE 74


>SB_1787| Best HMM Match : Peptidase_S9 (HMM E-Value=1.5e-08)
          Length = 1057

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 16/59 (27%), Positives = 26/59 (44%)
 Frame = +1

Query: 361  WFPRRSWSVACKRSTPYALRSPSKWSRNNKRTTCTSSSPYTDGWFYVTPSRPTASAGLL 537
            W P +  +    R +   L S   W R+N+RT      P +  + + +P +P    GLL
Sbjct: 936  WSPGKDSNTILTRESALPLSSRGGWVRDNRRT------PNSPRFTWTSPDKPLEGPGLL 988


>SB_31773| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 874

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = +3

Query: 66  CVFICDY-HGDSVFSRRHNKSVTIFKR 143
           CV +C Y H  SVF RR++ SV +  R
Sbjct: 689 CVVMCRYVHNVSVFMRRYDTSVRVVMR 715


>SB_11299| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3762

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = +1

Query: 193  CR*CRNGNTATSATCPACR 249
            C  C   NTA S TCPAC+
Sbjct: 2121 CETCLVRNTAESKTCPACQ 2139


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,774,006
Number of Sequences: 59808
Number of extensions: 427905
Number of successful extensions: 1355
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1212
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1347
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1805522550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)