Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021222
(693 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AJ277365-1|CAC10539.1| 796|Homo sapiens polyglutamine-containin... 81 5e-15
AY278024-1|AAP78945.1| 571|Homo sapiens interferon regulatory f... 77 6e-14
AY278023-1|AAP78944.1| 587|Homo sapiens interferon regulatory f... 77 6e-14
AL160408-2|CAI22768.1| 571|Homo sapiens interferon regulatory f... 77 6e-14
AL160408-1|CAI22767.1| 587|Homo sapiens interferon regulatory f... 77 6e-14
BC039002-1|AAH39002.1| 584|Homo sapiens interferon regulatory f... 73 7e-13
BC038222-1|AAH38222.1| 584|Homo sapiens interferon regulatory f... 73 7e-13
AY278022-1|AAP78943.1| 584|Homo sapiens interferon regulatory f... 73 7e-13
AK223622-1|BAD97342.1| 584|Homo sapiens interferon regulatory f... 73 7e-13
BC078181-1|AAH78181.1| 584|Homo sapiens interferon regulatory f... 72 2e-12
BC112185-1|AAI12186.1| 406|Homo sapiens LIM homeobox protein 2 ... 33 1.3
BC093662-1|AAH93662.1| 406|Homo sapiens LIM homeobox 2 protein. 33 1.3
AK094511-1|BAC04371.1| 397|Homo sapiens protein ( Homo sapiens ... 33 1.3
AF124735-1|AAD20013.1| 389|Homo sapiens LIM-homeodomain protein... 33 1.3
U11701-1|AAB08752.1| 423|Homo sapiens LIM-homeobox domain prote... 32 2.2
AF490839-1|AAM33254.1| 1093|Homo sapiens RGS3 isoform C2PA-RGS3 ... 31 3.0
>AJ277365-1|CAC10539.1| 796|Homo sapiens polyglutamine-containing
protein protein.
Length = 796
Score = 80.6 bits (190), Expect = 5e-15
Identities = 43/76 (56%), Positives = 48/76 (63%), Gaps = 3/76 (3%)
Frame = +2
Query: 254 MLHEFSEAVCRGCVNYEGADRIEVVLETARQLKRAHG-FQEGR--GPSHAKGAHRTPLEA 424
M+ +FSE VCRGCVNYEGADRIE V+ETARQLKRAHG FQ+GR GP G L A
Sbjct: 26 MIWDFSEPVCRGCVNYEGADRIEFVIETARQLKRAHGCFQDGRSPGPPPPVGVKTVALSA 85
Query: 425 HQNGAETTRGQPAPPA 472
+ A A A
Sbjct: 86 KEAAAAAAAAAAAAAA 101
Score = 42.7 bits (96), Expect = 0.001
Identities = 16/28 (57%), Positives = 18/28 (64%)
Frame = +3
Query: 207 KRQHCYLCDLPRMPWACCMSFQKQCVEG 290
+RQ CYLCDLPRMPWA F + G
Sbjct: 10 RRQSCYLCDLPRMPWAMIWDFSEPVCRG 37
>AY278024-1|AAP78945.1| 571|Homo sapiens interferon regulatory
factor-2 binding protein 2B protein.
Length = 571
Score = 77.0 bits (181), Expect = 6e-14
Identities = 35/48 (72%), Positives = 40/48 (83%), Gaps = 1/48 (2%)
Frame = +2
Query: 254 MLHEFSEAVCRGCVNYEGADRIEVVLETARQLKRAHG-FQEGRGPSHA 394
M+ +F+E VCRGCVNYEGADR+E V+ETARQLKRAHG F EGR P A
Sbjct: 28 MIWDFTEPVCRGCVNYEGADRVEFVIETARQLKRAHGCFPEGRSPPGA 75
Score = 42.7 bits (96), Expect = 0.001
Identities = 16/33 (48%), Positives = 20/33 (60%)
Frame = +3
Query: 192 MSVMQKRQHCYLCDLPRMPWACCMSFQKQCVEG 290
++ +RQ CYLCDLPRMPWA F + G
Sbjct: 7 VAAASRRQSCYLCDLPRMPWAMIWDFTEPVCRG 39
>AY278023-1|AAP78944.1| 587|Homo sapiens interferon regulatory
factor-2 binding protein 2A protein.
Length = 587
Score = 77.0 bits (181), Expect = 6e-14
Identities = 35/48 (72%), Positives = 40/48 (83%), Gaps = 1/48 (2%)
Frame = +2
Query: 254 MLHEFSEAVCRGCVNYEGADRIEVVLETARQLKRAHG-FQEGRGPSHA 394
M+ +F+E VCRGCVNYEGADR+E V+ETARQLKRAHG F EGR P A
Sbjct: 28 MIWDFTEPVCRGCVNYEGADRVEFVIETARQLKRAHGCFPEGRSPPGA 75
Score = 42.7 bits (96), Expect = 0.001
Identities = 16/33 (48%), Positives = 20/33 (60%)
Frame = +3
Query: 192 MSVMQKRQHCYLCDLPRMPWACCMSFQKQCVEG 290
++ +RQ CYLCDLPRMPWA F + G
Sbjct: 7 VAAASRRQSCYLCDLPRMPWAMIWDFTEPVCRG 39
>AL160408-2|CAI22768.1| 571|Homo sapiens interferon regulatory
factor 2 binding protein 2 protein.
Length = 571
Score = 77.0 bits (181), Expect = 6e-14
Identities = 35/48 (72%), Positives = 40/48 (83%), Gaps = 1/48 (2%)
Frame = +2
Query: 254 MLHEFSEAVCRGCVNYEGADRIEVVLETARQLKRAHG-FQEGRGPSHA 394
M+ +F+E VCRGCVNYEGADR+E V+ETARQLKRAHG F EGR P A
Sbjct: 28 MIWDFTEPVCRGCVNYEGADRVEFVIETARQLKRAHGCFPEGRSPPGA 75
Score = 42.7 bits (96), Expect = 0.001
Identities = 16/33 (48%), Positives = 20/33 (60%)
Frame = +3
Query: 192 MSVMQKRQHCYLCDLPRMPWACCMSFQKQCVEG 290
++ +RQ CYLCDLPRMPWA F + G
Sbjct: 7 VAAASRRQSCYLCDLPRMPWAMIWDFTEPVCRG 39
>AL160408-1|CAI22767.1| 587|Homo sapiens interferon regulatory
factor 2 binding protein 2 protein.
Length = 587
Score = 77.0 bits (181), Expect = 6e-14
Identities = 35/48 (72%), Positives = 40/48 (83%), Gaps = 1/48 (2%)
Frame = +2
Query: 254 MLHEFSEAVCRGCVNYEGADRIEVVLETARQLKRAHG-FQEGRGPSHA 394
M+ +F+E VCRGCVNYEGADR+E V+ETARQLKRAHG F EGR P A
Sbjct: 28 MIWDFTEPVCRGCVNYEGADRVEFVIETARQLKRAHGCFPEGRSPPGA 75
Score = 42.7 bits (96), Expect = 0.001
Identities = 16/33 (48%), Positives = 20/33 (60%)
Frame = +3
Query: 192 MSVMQKRQHCYLCDLPRMPWACCMSFQKQCVEG 290
++ +RQ CYLCDLPRMPWA F + G
Sbjct: 7 VAAASRRQSCYLCDLPRMPWAMIWDFTEPVCRG 39
>BC039002-1|AAH39002.1| 584|Homo sapiens interferon regulatory
factor 2 binding protein 1 protein.
Length = 584
Score = 73.3 bits (172), Expect = 7e-13
Identities = 36/77 (46%), Positives = 46/77 (59%)
Frame = +2
Query: 254 MLHEFSEAVCRGCVNYEGADRIEVVLETARQLKRAHGFQEGRGPSHAKGAHRTPLEAHQN 433
M+ +FSEAVCRGCVN+EGADRIE++++ ARQLKR+H EGR P H +
Sbjct: 24 MVWDFSEAVCRGCVNFEGADRIELLIDAARQLKRSHVLPEGRSPGPPALKHPATKDL--- 80
Query: 434 GAETTRGQPAPPAHHTP 484
A +G PP P
Sbjct: 81 AAAAAQGPQLPPPQAQP 97
Score = 41.1 bits (92), Expect = 0.004
Identities = 15/28 (53%), Positives = 18/28 (64%)
Frame = +3
Query: 207 KRQHCYLCDLPRMPWACCMSFQKQCVEG 290
+RQ CYLCDLP+MPWA F + G
Sbjct: 8 RRQWCYLCDLPKMPWAMVWDFSEAVCRG 35
>BC038222-1|AAH38222.1| 584|Homo sapiens interferon regulatory
factor 2 binding protein 1 protein.
Length = 584
Score = 73.3 bits (172), Expect = 7e-13
Identities = 36/77 (46%), Positives = 46/77 (59%)
Frame = +2
Query: 254 MLHEFSEAVCRGCVNYEGADRIEVVLETARQLKRAHGFQEGRGPSHAKGAHRTPLEAHQN 433
M+ +FSEAVCRGCVN+EGADRIE++++ ARQLKR+H EGR P H +
Sbjct: 24 MVWDFSEAVCRGCVNFEGADRIELLIDAARQLKRSHVLPEGRSPGPPALKHPATKDL--- 80
Query: 434 GAETTRGQPAPPAHHTP 484
A +G PP P
Sbjct: 81 AAAAAQGPQLPPPQAQP 97
Score = 41.1 bits (92), Expect = 0.004
Identities = 15/28 (53%), Positives = 18/28 (64%)
Frame = +3
Query: 207 KRQHCYLCDLPRMPWACCMSFQKQCVEG 290
+RQ CYLCDLP+MPWA F + G
Sbjct: 8 RRQWCYLCDLPKMPWAMVWDFSEAVCRG 35
>AY278022-1|AAP78943.1| 584|Homo sapiens interferon regulatory
factor-2 binding protein 1 protein.
Length = 584
Score = 73.3 bits (172), Expect = 7e-13
Identities = 36/77 (46%), Positives = 46/77 (59%)
Frame = +2
Query: 254 MLHEFSEAVCRGCVNYEGADRIEVVLETARQLKRAHGFQEGRGPSHAKGAHRTPLEAHQN 433
M+ +FSEAVCRGCVN+EGADRIE++++ ARQLKR+H EGR P H +
Sbjct: 24 MVWDFSEAVCRGCVNFEGADRIELLIDAARQLKRSHVLPEGRSPGPPALKHPATKDL--- 80
Query: 434 GAETTRGQPAPPAHHTP 484
A +G PP P
Sbjct: 81 AAAAAQGPQLPPPQAQP 97
Score = 41.1 bits (92), Expect = 0.004
Identities = 15/28 (53%), Positives = 18/28 (64%)
Frame = +3
Query: 207 KRQHCYLCDLPRMPWACCMSFQKQCVEG 290
+RQ CYLCDLP+MPWA F + G
Sbjct: 8 RRQWCYLCDLPKMPWAMVWDFSEAVCRG 35
>AK223622-1|BAD97342.1| 584|Homo sapiens interferon regulatory
factor 2 binding protein 1 variant protein.
Length = 584
Score = 73.3 bits (172), Expect = 7e-13
Identities = 36/77 (46%), Positives = 46/77 (59%)
Frame = +2
Query: 254 MLHEFSEAVCRGCVNYEGADRIEVVLETARQLKRAHGFQEGRGPSHAKGAHRTPLEAHQN 433
M+ +FSEAVCRGCVN+EGADRIE++++ ARQLKR+H EGR P H +
Sbjct: 24 MVWDFSEAVCRGCVNFEGADRIELLIDAARQLKRSHVLPEGRSPGPPALKHPATKDP--- 80
Query: 434 GAETTRGQPAPPAHHTP 484
A +G PP P
Sbjct: 81 AAAAAQGPQLPPPQAQP 97
Score = 41.1 bits (92), Expect = 0.004
Identities = 15/28 (53%), Positives = 18/28 (64%)
Frame = +3
Query: 207 KRQHCYLCDLPRMPWACCMSFQKQCVEG 290
+RQ CYLCDLP+MPWA F + G
Sbjct: 8 RRQWCYLCDLPKMPWAMVWDFSEAVCRG 35
>BC078181-1|AAH78181.1| 584|Homo sapiens interferon regulatory
factor 2 binding protein 1 protein.
Length = 584
Score = 71.7 bits (168), Expect = 2e-12
Identities = 35/74 (47%), Positives = 44/74 (59%)
Frame = +2
Query: 263 EFSEAVCRGCVNYEGADRIEVVLETARQLKRAHGFQEGRGPSHAKGAHRTPLEAHQNGAE 442
+FSEAVCRGCVN+EGADRIE++++ ARQLKR+H EGR P H + A
Sbjct: 27 DFSEAVCRGCVNFEGADRIELLIDAARQLKRSHVLPEGRSPGPPALKHPATKDL---AAA 83
Query: 443 TTRGQPAPPAHHTP 484
+G PP P
Sbjct: 84 AAQGPQLPPPQAQP 97
Score = 41.1 bits (92), Expect = 0.004
Identities = 15/28 (53%), Positives = 18/28 (64%)
Frame = +3
Query: 207 KRQHCYLCDLPRMPWACCMSFQKQCVEG 290
+RQ CYLCDLP+MPWA F + G
Sbjct: 8 RRQWCYLCDLPKMPWAIVWDFSEAVCRG 35
>BC112185-1|AAI12186.1| 406|Homo sapiens LIM homeobox protein 2
protein.
Length = 406
Score = 32.7 bits (71), Expect = 1.3
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = +2
Query: 380 GPSHAKGAHRTPLEAHQNGAE-TTRGQPAPPAHHTPTVGFTLHHHDLRLVQAFW 538
GP A+ L ++N AE R QP P + T + + HH LR +++++
Sbjct: 232 GPGADLAAYNAALSCNENDAEHLDRDQPYPSSQKTKRMRTSFKHHQLRTMKSYF 285
>BC093662-1|AAH93662.1| 406|Homo sapiens LIM homeobox 2 protein.
Length = 406
Score = 32.7 bits (71), Expect = 1.3
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = +2
Query: 380 GPSHAKGAHRTPLEAHQNGAE-TTRGQPAPPAHHTPTVGFTLHHHDLRLVQAFW 538
GP A+ L ++N AE R QP P + T + + HH LR +++++
Sbjct: 232 GPGADLAAYNAALSCNENDAEHLDRDQPYPSSQKTKRMRTSFKHHQLRTMKSYF 285
>AK094511-1|BAC04371.1| 397|Homo sapiens protein ( Homo sapiens
cDNA FLJ37192 fis, clone BRALZ2003525, highly similar to
LIM/HOMEOBOX PROTEIN LHX2. ).
Length = 397
Score = 32.7 bits (71), Expect = 1.3
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = +2
Query: 380 GPSHAKGAHRTPLEAHQNGAE-TTRGQPAPPAHHTPTVGFTLHHHDLRLVQAFW 538
GP A+ L ++N AE R QP P + T + + HH LR +++++
Sbjct: 223 GPGADLAAYNAALSCNENDAEHLDRDQPYPSSQKTKRMRTSFKHHQLRTMKSYF 276
>AF124735-1|AAD20013.1| 389|Homo sapiens LIM-homeodomain protein
HLHX2 protein.
Length = 389
Score = 32.7 bits (71), Expect = 1.3
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = +2
Query: 380 GPSHAKGAHRTPLEAHQNGAE-TTRGQPAPPAHHTPTVGFTLHHHDLRLVQAFW 538
GP A+ L ++N AE R QP P + T + + HH LR +++++
Sbjct: 215 GPGADLAAYNAALSCNENDAEHLDRDQPYPSSQKTKRMRTSFKHHQLRTMKSYF 268
>U11701-1|AAB08752.1| 423|Homo sapiens LIM-homeobox domain protein
protein.
Length = 423
Score = 31.9 bits (69), Expect = 2.2
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = +2
Query: 380 GPSHAKGAHRTPLEAHQNGAE-TTRGQPAPPAHHTPTVGFTLHHHDLRLVQAFW 538
GP A+ L ++N AE R QP P + T + + HH LR +++++
Sbjct: 230 GPGADLAAYTRALSCNENDAEHLDRDQPYPSSQKTKRMRTSFKHHQLRTMKSYF 283
>AF490839-1|AAM33254.1| 1093|Homo sapiens RGS3 isoform C2PA-RGS3
protein.
Length = 1093
Score = 31.5 bits (68), Expect = 3.0
Identities = 18/54 (33%), Positives = 25/54 (46%)
Frame = +2
Query: 326 VLETARQLKRAHGFQEGRGPSHAKGAHRTPLEAHQNGAETTRGQPAPPAHHTPT 487
+ ET KR +EG+GP GA +P + G E GQ PP +P+
Sbjct: 576 MFETEADEKREMALEEGKGP----GAEDSPSKEPSPGQELPPGQDLPPNKDSPS 625
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 94,195,532
Number of Sequences: 237096
Number of extensions: 1920740
Number of successful extensions: 5961
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 5295
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5960
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7951235188
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -