Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021222
(693 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g20740.1 68417.m03014 pentatricopeptide (PPR) repeat-containi... 29 2.2
At5g03450.1 68418.m00300 zinc finger (C3HC4-type RING finger) fa... 29 2.9
At1g23480.2 68414.m02946 glycosyl transferase family 2 protein s... 29 2.9
At1g23480.1 68414.m02945 glycosyl transferase family 2 protein s... 29 2.9
At1g61030.1 68414.m06871 expressed protein 29 3.9
At5g50780.1 68418.m06291 ATP-binding region, ATPase-like domain-... 28 5.1
At5g10340.1 68418.m01199 F-box protein-related / SLF-related con... 27 8.9
At4g02660.1 68417.m00361 WD-40 repeat family protein / beige-rel... 27 8.9
At3g19300.1 68416.m02448 protein kinase family protein contains ... 27 8.9
At3g02510.1 68416.m00239 regulator of chromosome condensation (R... 27 8.9
At1g68920.2 68414.m07888 basic helix-loop-helix (bHLH) family pr... 27 8.9
At1g68920.1 68414.m07887 basic helix-loop-helix (bHLH) family pr... 27 8.9
>At4g20740.1 68417.m03014 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 727
Score = 29.5 bits (63), Expect = 2.2
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +2
Query: 401 AHRTPLEAHQNGAETTRGQPAPPAHHT 481
AHRTP + + ET P+PP+H T
Sbjct: 56 AHRTPFDLRKWDPETHLPPPSPPSHST 82
>At5g03450.1 68418.m00300 zinc finger (C3HC4-type RING finger)
family protein
Length = 630
Score = 29.1 bits (62), Expect = 2.9
Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Frame = +3
Query: 93 DSVFSRRHNKSVTIFKRNEENRSLALRTTPGGEMSVMQKRQHCYLC--DLPRMPWAC 257
D + R +++ + N LA+ + G ++SV+ H + DLP PW+C
Sbjct: 326 DDILLPRTTRAIKDLHLSPHNNGLAVFGSLGKKLSVISLESHNTVLSYDLPAAPWSC 382
>At1g23480.2 68414.m02946 glycosyl transferase family 2 protein
similar to cellulose synthase from Agrobacterium
tumeficiens [gi:710492] and Agrobacterium radiobacter
[gi:710493]; contains Pfam glycosyl transferase, group 2
family protein domain PF00535 isoform contains GG
acceptor splice site at intron 1
Length = 484
Score = 29.1 bits (62), Expect = 2.9
Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = +2
Query: 485 TVGFTLHHHDLRLVQAFWLNMEVEE-TNTRVDD*PIYLHIIFRRMQG 622
T+ F +H+H++ LVQ W + E TR+ + + H + + G
Sbjct: 159 TIPFLIHNHEISLVQCRWKFVNANECLMTRMQEMSLNYHFVAEQESG 205
>At1g23480.1 68414.m02945 glycosyl transferase family 2 protein
similar to cellulose synthase from Agrobacterium
tumeficiens [gi:710492] and Agrobacterium radiobacter
[gi:710493]; contains Pfam glycosyl transferase, group 2
family protein domain PF00535 isoform contains GG
acceptor splice site at intron 1
Length = 556
Score = 29.1 bits (62), Expect = 2.9
Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = +2
Query: 485 TVGFTLHHHDLRLVQAFWLNMEVEE-TNTRVDD*PIYLHIIFRRMQG 622
T+ F +H+H++ LVQ W + E TR+ + + H + + G
Sbjct: 231 TIPFLIHNHEISLVQCRWKFVNANECLMTRMQEMSLNYHFVAEQESG 277
>At1g61030.1 68414.m06871 expressed protein
Length = 840
Score = 28.7 bits (61), Expect = 3.9
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Frame = +3
Query: 120 KSVTIFKRNEENRSLALRTTP--GGEMSVMQKRQHCYL 227
KS+++ KRN+ + TTP G + SVM HC L
Sbjct: 440 KSLSVSKRNQSAFLVGCSTTPKPGSQSSVMSTIDHCTL 477
>At5g50780.1 68418.m06291 ATP-binding region, ATPase-like
domain-containing protein low similarity to microrchidia
[Homo sapiens] GI:5410257; contains Pfam profile
PF02518: ATPase, histidine kinase-, DNA gyrase B-, and
HSP90-like domain protein
Length = 823
Score = 28.3 bits (60), Expect = 5.1
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = +2
Query: 416 LEAHQNGAETTRGQPAPPAHHTPTVGFTLHHHDLRLVQAFW 538
L Q A T G HH GF ++H + RL++ FW
Sbjct: 470 LHVSQLSAVVTIGFVKDAKHHVDVQGFNVYHKN-RLIKPFW 509
>At5g10340.1 68418.m01199 F-box protein-related / SLF-related
contains weak hit to Pfam Pfam PF00646: F-box domain
and to TIGRFAM TIGR01640 : F-box protein interaction
domain; weakly similar to self-incompatibility (S-)
locus F-box (GI:29420811) [Prunus mume]
Length = 445
Score = 27.5 bits (58), Expect = 8.9
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +1
Query: 406 PYALRSPSKWSRNNKRTTCTSSSPYTDGWFYVTPSRP 516
P L + ++ N+K TTC T+ W YV P+ P
Sbjct: 243 PVWLYNSAELDLNDKPTTCEVFDFATNAWRYVFPASP 279
>At4g02660.1 68417.m00361 WD-40 repeat family protein /
beige-related contains Pfam PF00400: WD domain, G-beta
repeat; similar to BEIGE (GI:3928547) [Rattus
norvegicus]; lysosomal trafficking regulator - Bos
taurus, EMBL: AF114785
Length = 3471
Score = 27.5 bits (58), Expect = 8.9
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = -2
Query: 227 EVAVLPFLHHRHLAAGCSAECERSVFFV 144
EV V PFL +A+ AECE++ F V
Sbjct: 895 EVLVPPFLTSESMASAEMAECEKASFLV 922
>At3g19300.1 68416.m02448 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 663
Score = 27.5 bits (58), Expect = 8.9
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 3/35 (8%)
Frame = -2
Query: 227 EVAVLPFLHHRHLAA---GCSAECERSVFFVSLEN 132
E+ +L LHHRHL A C+ + ER + + +EN
Sbjct: 370 EIELLARLHHRHLVALKGFCNKKNERFLVYEYMEN 404
>At3g02510.1 68416.m00239 regulator of chromosome condensation
(RCC1) family protein similar to UVB-resistance protein
UVR8 [Arabidopsis thaliana] GI:5478530; contains Pfam
profile PF00415: Regulator of chromosome condensation
(RCC1)
Length = 393
Score = 27.5 bits (58), Expect = 8.9
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = +1
Query: 373 RSWSVACKRSTPYALRSPSKWSRNNKRTTCTSSSPYTDGW 492
+ W+ + PY++RS SRN+ C + +T GW
Sbjct: 26 KEWACVVEALEPYSVRSVVSGSRNS-LAICDDGTMFTWGW 64
>At1g68920.2 68414.m07888 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 485
Score = 27.5 bits (58), Expect = 8.9
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = +1
Query: 394 KRSTPYALRSPSKWSRNNKRTTCTSSSPYTDGWFYVTPSRPTAS 525
KR+ + SP K S + K+ SS P DG+ +V R A+
Sbjct: 267 KRNDEQSPNSPGKKSNSGKQQGKQSSDPPKDGYIHVRARRGQAT 310
>At1g68920.1 68414.m07887 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 486
Score = 27.5 bits (58), Expect = 8.9
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = +1
Query: 394 KRSTPYALRSPSKWSRNNKRTTCTSSSPYTDGWFYVTPSRPTAS 525
KR+ + SP K S + K+ SS P DG+ +V R A+
Sbjct: 268 KRNDEQSPNSPGKKSNSGKQQGKQSSDPPKDGYIHVRARRGQAT 311
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,920,252
Number of Sequences: 28952
Number of extensions: 275852
Number of successful extensions: 918
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 883
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 918
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1477286152
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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