Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021221
         (709 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        24   1.1  
AM292348-1|CAL23160.2|  346|Tribolium castaneum gustatory recept...    22   4.3  

>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 15/58 (25%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
 Frame = -3

Query: 509 PHVSNPVPGIISLNESISGEISGMDSGVCAVSEYSGDRIDINGVP-LLGGIAGQNFSD 339
           PH   P P    L +++   I GM +     +   GD +++N  P     ++G N S+
Sbjct: 415 PHYVTPTPPEAPLFQNVLPPIGGMMNWNMPSTSVVGDMLNMNWNPSAQNDLSGVNLSE 472



 Score = 22.2 bits (45), Expect = 4.3
 Identities = 9/21 (42%), Positives = 10/21 (47%)
 Frame = +2

Query: 152 PDPPTPVPSTGNLLSNVAPPL 214
           P   TP P    L  NV PP+
Sbjct: 415 PHYVTPTPPEAPLFQNVLPPI 435


>AM292348-1|CAL23160.2|  346|Tribolium castaneum gustatory receptor
           candidate 27 protein.
          Length = 346

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 11/44 (25%), Positives = 20/44 (45%)
 Frame = -3

Query: 515 TLPHVSNPVPGIISLNESISGEISGMDSGVCAVSEYSGDRIDIN 384
           T+ HV NP   +  +    S  ++   + +CA+  Y+   I  N
Sbjct: 21  TVWHVENPTYRLYKIFVVFSFAVTFFSAWICALVNYNVSEISEN 64


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,315
Number of Sequences: 336
Number of extensions: 3520
Number of successful extensions: 5
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18738900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)