Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021221
         (709 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha...    31   0.21 
SPAC2F7.03c |pom1||DYRK family protein kinase Pom1|Schizosacchar...    27   2.0  
SPBC776.06c |||spindle pole body interacting protein |Schizosacc...    27   2.0  
SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subuni...    25   8.0  
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom...    25   8.0  

>SPCC1235.05c |fft2||fun thirty related protein
           Fft2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1284

 Score = 30.7 bits (66), Expect = 0.21
 Identities = 16/45 (35%), Positives = 22/45 (48%)
 Frame = +2

Query: 140 RKKIPDPPTPVPSTGNLLSNVAPPLQLPNFVTAVAEPMLRPSVNW 274
           R    +P T  P    LL+  APP++LP   T     ++R SV W
Sbjct: 223 RSSSANPVTTPPVNNTLLTPPAPPVELPPVTTTSPNAIIR-SVQW 266


>SPAC2F7.03c |pom1||DYRK family protein kinase
           Pom1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1087

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = +1

Query: 358 AIPPSKGTPLMSIRSPEYSETAQTPESIPEISPEMDSFSD 477
           A PP    P +SI   + S   + PE IP + P   +F D
Sbjct: 512 ASPPP--VPRLSITRSQVSREPEKPEEIPSVPPLPSNFKD 549


>SPBC776.06c |||spindle pole body interacting protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 598

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +2

Query: 191 LSNVAPPLQLPNFVTAVAEPMLRPSVNWW 277
           LSNV   ++LP ++  V  P      +WW
Sbjct: 329 LSNVESLVKLPGYLAGVMNPAFTHHADWW 357


>SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subunit
           Rpa2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1227

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = +2

Query: 176 STGNLLSNVAPPLQLPNFVTAVAEPM 253
           STGNL+SN    LQ     T VAE +
Sbjct: 495 STGNLVSNTGLDLQQATGYTVVAEKL 520


>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1562

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -3

Query: 434 SGVCAVSEYSGDRIDINGVPLLGGIAGQ 351
           SG C V + +GD  + NG   L  I G+
Sbjct: 492 SGTCTVEDPNGDLYNFNGSMKLDSIQGE 519


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,845,868
Number of Sequences: 5004
Number of extensions: 57955
Number of successful extensions: 212
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 211
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)