Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021221
(709 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0650 - 26423829-26424179,26424379-26424612,26424961-264252... 31 0.68
02_03_0328 - 17776141-17776755,17776952-17777149,17777545-17778006 30 2.1
03_02_0362 - 7809752-7810357,7811018-7811914 29 2.7
11_03_0191 - 11366831-11367676 29 3.6
05_06_0053 - 25202103-25202510,25202818-25202841 29 3.6
08_02_1194 + 25147935-25149455 29 4.8
02_04_0295 + 21682029-21683534 29 4.8
10_06_0059 - 10149439-10149477,10150001-10150927 28 6.3
08_02_1330 + 26191062-26191314,26191894-26191961,26192125-261923... 28 6.3
05_06_0020 + 24976990-24977167,24978763-24978874,24979634-249797... 28 6.3
01_06_1354 - 36599904-36600643,36600851-36601352 28 6.3
12_02_0046 + 12830974-12832386 28 8.4
09_06_0081 + 20745627-20748144,20748211-20748308 28 8.4
04_04_0917 - 29404341-29404519,29404610-29404744,29404898-294052... 28 8.4
01_01_0784 + 6068230-6068580,6068676-6069127,6070208-6070736 28 8.4
>03_05_0650 -
26423829-26424179,26424379-26424612,26424961-26425236,
26425372-26425648,26425751-26425764,26425843-26425989,
26426306-26426366,26426570-26426604,26426688-26426882,
26428230-26428439,26428865-26428940,26429519-26429799
Length = 718
Score = 31.5 bits (68), Expect = 0.68
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Frame = -3
Query: 698 CLKSSLIGDTFTSLSDATTMYRSPPLFKIFLHL--WIKGSDH*IY*TLRLLGY 546
CL+S + GD FT+L DA+T+ L+ + LH W+ Y T + GY
Sbjct: 298 CLQSQVTGDAFTTLGDASTVAEYLLLWGMDLHSQGWVTALKLRKYITQLVTGY 350
>02_03_0328 - 17776141-17776755,17776952-17777149,17777545-17778006
Length = 424
Score = 29.9 bits (64), Expect = 2.1
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = +2
Query: 140 RKKIPDPPTPVPSTGNLLS 196
R+++P PTP+P GNLLS
Sbjct: 30 RRRLPPGPTPLPLVGNLLS 48
>03_02_0362 - 7809752-7810357,7811018-7811914
Length = 500
Score = 29.5 bits (63), Expect = 2.7
Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = +2
Query: 119 LLEMSSD-RKKIPDPPTPVPSTGNLLSNVAPP 211
LL + SD R+ +P P P+P GNLL A P
Sbjct: 20 LLRLFSDARRNLPPGPRPLPLVGNLLELGAKP 51
>11_03_0191 - 11366831-11367676
Length = 281
Score = 29.1 bits (62), Expect = 3.6
Identities = 15/54 (27%), Positives = 27/54 (50%)
Frame = +1
Query: 325 IDQQASEKFCPAIPPSKGTPLMSIRSPEYSETAQTPESIPEISPEMDSFSDIMP 486
+DQ ++ P P + TPL+S SP+ + +TP + + D+ +I P
Sbjct: 158 VDQTVTQ---PPAPEIRNTPLISTSSPQPGSSLETPIQVDSETEGTDTEPEIEP 208
>05_06_0053 - 25202103-25202510,25202818-25202841
Length = 143
Score = 29.1 bits (62), Expect = 3.6
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = -3
Query: 485 GIISLNESISGEISGMDSGVCAVSEYSGDRIDINGVPLLGGIAGQN 348
G+ E + GE+ G D GV V+ + ++ + G GG+ G+N
Sbjct: 17 GLEGAKEGVHGEVDGGDRGVVGVTGNTTPKVVVGGG---GGLGGEN 59
>08_02_1194 + 25147935-25149455
Length = 506
Score = 28.7 bits (61), Expect = 4.8
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = +2
Query: 134 SDRKKIPDPPTPVPSTGNLLS 196
+ R+++P PTP+P GN+LS
Sbjct: 29 AQRRRLPPGPTPLPVIGNVLS 49
>02_04_0295 + 21682029-21683534
Length = 501
Score = 28.7 bits (61), Expect = 4.8
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +2
Query: 134 SDRKKIPDPPTPVPSTGNLLS 196
S R +P PTP+P GNLLS
Sbjct: 35 SSRPPLPPGPTPLPLIGNLLS 55
>10_06_0059 - 10149439-10149477,10150001-10150927
Length = 321
Score = 28.3 bits (60), Expect = 6.3
Identities = 12/25 (48%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
Frame = +2
Query: 122 LEMSSD-RKKIPDPPTPVPSTGNLL 193
L++ D R+++P PTP+P GNLL
Sbjct: 21 LQLFGDARRRLPPGPTPLPLIGNLL 45
>08_02_1330 +
26191062-26191314,26191894-26191961,26192125-26192355,
26192736-26192837,26192893-26192955,26193910-26193984
Length = 263
Score = 28.3 bits (60), Expect = 6.3
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +1
Query: 367 PSKGTPLMSIRSPEYSETAQTPESIPEIS 453
P L ++ P+ + T Q P+S+PEIS
Sbjct: 115 PDLREKLSGVQRPQLNSTVQIPKSVPEIS 143
>05_06_0020 +
24976990-24977167,24978763-24978874,24979634-24979722,
24979801-24979869,24979953-24980082,24980506-24980664,
24980767-24981127,24981343-24981452,24981753-24981909,
24983336-24983748,24983828-24984020,24984384-24986198
Length = 1261
Score = 28.3 bits (60), Expect = 6.3
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
Frame = +1
Query: 343 EKFCPAIPPS----KGTPLMSIRSPEYSETAQTPESIPEISPEMDSFSDIMPGT 492
EK CP P S K T L S+RS + + P +P++ + S S +P T
Sbjct: 821 EKACPVPPKSPPSAKDTSLPSVRSLQIDKPVPVPPRLPQVD-KAASLSSELPQT 873
>01_06_1354 - 36599904-36600643,36600851-36601352
Length = 413
Score = 28.3 bits (60), Expect = 6.3
Identities = 17/43 (39%), Positives = 20/43 (46%)
Frame = +2
Query: 506 GEGCSCQWWYSTKSSREGEEFSRFNDHYP*STDEGIS*KVEEI 634
G GC K+S G EF+ F DH P S D + V EI
Sbjct: 349 GHGCCSSHGQLRKNSLLGPEFNEFEDHPPIS-DSSFASLVSEI 390
>12_02_0046 + 12830974-12832386
Length = 470
Score = 27.9 bits (59), Expect = 8.4
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +2
Query: 143 KKIPDPPTPVPSTGNLLSNVAPPLQLPNFVTAVAEPMLRPS 265
+++ P P PS + VAPP Q+P A P+ RP+
Sbjct: 239 RRVAPQPAP-PSLRTAPAAVAPPRQVPVITQQQAPPLKRPA 278
>09_06_0081 + 20745627-20748144,20748211-20748308
Length = 871
Score = 27.9 bits (59), Expect = 8.4
Identities = 16/42 (38%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Frame = +2
Query: 149 IPDPPTPVPSTGNLLSNVAPPLQLPNFVT--AVAEPMLRPSV 268
+P PP P P L S AP + P A A PM+ P V
Sbjct: 511 VPTPPAPAPPVSTLPS-PAPSVHTPPVTAPPATAPPMIAPPV 551
>04_04_0917 -
29404341-29404519,29404610-29404744,29404898-29405225,
29405313-29405532,29405653-29406647,29407233-29407493,
29407534-29407872,29409309-29409497
Length = 881
Score = 27.9 bits (59), Expect = 8.4
Identities = 15/54 (27%), Positives = 25/54 (46%)
Frame = +3
Query: 375 RNTIDVYTITRILGDCTNSRIHTRNFTRDGFIQ*YNARHRVADVGKGAVASGGI 536
+NTI+V T+ RI+ + T++ G + YNA+ R G G+
Sbjct: 760 KNTIEVATVLRIVQRLFKEAVSTQSKLSVGVVSPYNAQVRAIQEKVGKFIKNGL 813
>01_01_0784 + 6068230-6068580,6068676-6069127,6070208-6070736
Length = 443
Score = 27.9 bits (59), Expect = 8.4
Identities = 14/45 (31%), Positives = 20/45 (44%)
Frame = +3
Query: 486 RHRVADVGKGAVASGGILQRVAEKAKSSVDSMITTLDPQMKEYLK 620
+ R D GKG + G+ +R E+ +D TT P Y K
Sbjct: 248 KKRREDGGKGGLYHAGLGKRSQERVIQKIDCYCTTQPPHHMTYFK 292
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,697,766
Number of Sequences: 37544
Number of extensions: 410995
Number of successful extensions: 1543
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1442
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1538
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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