Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021221
         (709 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45101| Best HMM Match : AdoMetDC_leader (HMM E-Value=1.6)           39   0.003
SB_59437| Best HMM Match : AAA (HMM E-Value=7.4e-08)                   29   4.9  
SB_58036| Best HMM Match : Cadherin (HMM E-Value=0)                    28   8.5  
SB_54207| Best HMM Match : Sulfotransfer_1 (HMM E-Value=1.6e-34)       28   8.5  
SB_33342| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.5  

>SB_45101| Best HMM Match : AdoMetDC_leader (HMM E-Value=1.6)
          Length = 153

 Score = 39.1 bits (87), Expect = 0.003
 Identities = 17/31 (54%), Positives = 24/31 (77%)
 Frame = +3

Query: 525 SGGILQRVAEKAKSSVDSMITTLDPQMKEYL 617
           +  I + + EK KSSVD++ITTLDP M++YL
Sbjct: 122 TSSIGRNLVEKTKSSVDTVITTLDPAMEDYL 152


>SB_59437| Best HMM Match : AAA (HMM E-Value=7.4e-08)
          Length = 568

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 12/29 (41%), Positives = 20/29 (68%)
 Frame = +1

Query: 361 IPPSKGTPLMSIRSPEYSETAQTPESIPE 447
           + P K TP+ +++ PE S+ A+TPE I +
Sbjct: 39  VTPKKTTPVKALKEPE-SKKARTPEKIKQ 66


>SB_58036| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 6074

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 18/61 (29%), Positives = 29/61 (47%)
 Frame = +2

Query: 11   TRFYFQIDTYIRLKILIIAQSALFLSLKHQGKI*NRLLEMSSDRKKIPDPPTPVPSTGNL 190
            TR+Y Q+   + +   +   +A  L     GK+   +LE +SD K + D  T V +T   
Sbjct: 4075 TRYYVQLVENVAIGTTVTQVTASDLDSSLNGKVLFSILEGNSDGKFVIDQNTGVVTTNKS 4134

Query: 191  L 193
            L
Sbjct: 4135 L 4135



 Score = 27.9 bits (59), Expect = 8.5
 Identities = 18/61 (29%), Positives = 29/61 (47%)
 Frame = +2

Query: 11   TRFYFQIDTYIRLKILIIAQSALFLSLKHQGKI*NRLLEMSSDRKKIPDPPTPVPSTGNL 190
            TR+Y Q+   + +   +   +A  L     GK+   +LE +SD K + D  T V +T   
Sbjct: 4512 TRYYVQLVENVAIGTTVTQVTASDLDSSLNGKVLFSILEGNSDGKFVIDQNTGVVTTNKS 4571

Query: 191  L 193
            L
Sbjct: 4572 L 4572


>SB_54207| Best HMM Match : Sulfotransfer_1 (HMM E-Value=1.6e-34)
          Length = 349

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = +1

Query: 355 PAIPPSKGTPLMSIRSPEYSETAQTPESIPEISPEM 462
           PA+P +  T +M  ++P Y  T + P  + E+SP++
Sbjct: 144 PAVPKAADTIVME-KTPAYFVTEKVPARVHEMSPDV 178


>SB_33342| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1189

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 13/46 (28%), Positives = 20/46 (43%)
 Frame = +2

Query: 125 EMSSDRKKIPDPPTPVPSTGNLLSNVAPPLQLPNFVTAVAEPMLRP 262
           E+S  +  +P P T +P+T    + + PP   P       EP   P
Sbjct: 466 ELSVYKTGVPLPTTRLPTTAQTPTTILPPTTTPTPPPTTTEPQRPP 511


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,933,950
Number of Sequences: 59808
Number of extensions: 434268
Number of successful extensions: 1265
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1264
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1865706635
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)