Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021221
         (709 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    25   0.70 
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    24   1.6  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   2.1  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   2.1  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 25.0 bits (52), Expect = 0.70
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +2

Query: 122  LEMSSDRKKIPDPPTPVPSTG 184
            LE ++ R++ P PP P PS+G
Sbjct: 1345 LERTAWRQQQPPPPPPPPSSG 1365


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
 Frame = -3

Query: 704 QNCLKSSLIGDT----FTSLSDATTMYRSPPLFKIFLHLWIKGS 585
           +N LK   +G      F  ++DA +   +P  FK+ +  WIKG+
Sbjct: 305 ENTLKYYEVGSNVPFNFKFITDANSS-STPEQFKVIIDNWIKGT 347



 Score = 21.8 bits (44), Expect = 6.6
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +1

Query: 631 DLYIVVASDKDVKVSPIRELFRQFW 705
           D YI V   KD K +PI++ +   W
Sbjct: 147 DYYIWVDPVKDDKGNPIKDKYPNNW 171


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -1

Query: 490 CLALYH*MNPSRVKFLVWILEFVQSPSIRV 401
           C A+   + PS VK LV ++ ++Q PS  +
Sbjct: 146 CTAVLRCVVPSFVKDLVRVVSWLQEPSFYI 175


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -1

Query: 490 CLALYH*MNPSRVKFLVWILEFVQSPSIRV 401
           C A+   + PS VK LV ++ ++Q PS  +
Sbjct: 146 CTAVLRCVVPSFVKDLVRVVSWLQEPSFYI 175


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,235
Number of Sequences: 438
Number of extensions: 4321
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21804885
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)