Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021221
         (709 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g28950.1 68418.m03582 hypothetical protein                          29   2.3  
At4g11380.1 68417.m01835 beta-adaptin, putative strong similarit...    29   3.0  
At4g09030.1 68417.m01490 arabinogalactan-protein (AGP10) identic...    29   4.0  
At5g42870.1 68418.m05225 lipin family protein contains Pfam prof...    28   7.0  
At5g12040.2 68418.m01407 carbon-nitrogen hydrolase family protei...    28   7.0  
At5g12040.1 68418.m01408 carbon-nitrogen hydrolase family protei...    28   7.0  
At5g14330.1 68418.m01675 expressed protein                             27   9.2  
At4g33560.1 68417.m04769 expressed protein                             27   9.2  

>At5g28950.1 68418.m03582 hypothetical protein
          Length = 148

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +3

Query: 540 QRVAEKAKSSVDSMITTLDPQMKEYLKKWRRSVHS 644
           + V E+   + D ++TT D Q +EY  +WR ++ S
Sbjct: 105 EEVVEEVNDNNDEVLTTQD-QQREYANQWRETIAS 138


>At4g11380.1 68417.m01835 beta-adaptin, putative strong similarity
           to SP|Q10567 Adapter-related protein complex 1 beta 1
           subunit (Beta-adaptin 1) [Homo sapiens], beta-adaptin
           [Drosophila melanogaster] GI:434902; contains Pfam
           profile: PF01602 Adaptin N terminal region
          Length = 894

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 28/117 (23%), Positives = 50/117 (42%), Gaps = 7/117 (5%)
 Frame = -3

Query: 701 NCLKSSLIGDTFTSLSDATTMYRSPP-LFKIFLHLWIKGSDH*IY*TLRLLGYSL*N--- 534
           N L  SL+ +  T++S  +++Y  PP  F   L   ++ ++   +      GYS  N   
Sbjct: 554 NQLDPSLLDELLTNISTLSSVYHKPPEAFVTRLKTTVQKTEDEDFAEGSEAGYSSSNPVD 613

Query: 533 ---TTTGNCTLPHVSNPVPGIISLNESISGEISGMDSGVCAVSEYSGDRIDINGVPL 372
              +  GN   P    P P + +    + G++ G+D+      +   D I  +G PL
Sbjct: 614 SAASPPGNIPQPSGRQPAPAVPAPVPDLLGDLMGLDNAAIVPVD---DPITQSGPPL 667


>At4g09030.1 68417.m01490 arabinogalactan-protein (AGP10) identical
           to gi|10880497|gb|AAG24278; supported by Ceres cDNA
           265772
          Length = 127

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = +1

Query: 337 ASEKFCPAIPPSKGTPLMSIRSPEYSETAQTPESIPEISP 456
           A+    P  PP+ G+PL S  SP    T+ TP+  P   P
Sbjct: 59  ATPTAAPVSPPA-GSPLPSSASPPAPPTSLTPDGAPVAGP 97


>At5g42870.1 68418.m05225 lipin family protein contains Pfam
           profile: PF04571 lipin, N-terminal conserved region
          Length = 930

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 13/53 (24%), Positives = 24/53 (45%)
 Frame = +1

Query: 325 IDQQASEKFCPAIPPSKGTPLMSIRSPEYSETAQTPESIPEISPEMDSFSDIM 483
           +D   S+    +  P   T  + +R  E S      ES+ E SP++ +F  ++
Sbjct: 482 MDASPSQPLSQSFDPCFNTSKLDLREDESSSGGLDAESVAESSPKLKAFKHVI 534


>At5g12040.2 68418.m01407 carbon-nitrogen hydrolase family protein
           similar to Nit protein 2 [Homo sapiens] GI:9367116;
           contains Pfam profile PF00795: hydrolase,
           carbon-nitrogen family
          Length = 294

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 17/63 (26%), Positives = 30/63 (47%)
 Frame = +1

Query: 370 SKGTPLMSIRSPEYSETAQTPESIPEISPEMDSFSDIMPGTGLLTWGRVQLPVVVFYKE* 549
           SKG  L+ +  PE   +  + +S P  + E+D+  D  P T +L+    +L + +     
Sbjct: 117 SKGAKLVLL--PEIWNSPYSNDSFPVYAEEIDAGGDASPSTAMLSEVSKRLKITIIGGSI 174

Query: 550 PRR 558
           P R
Sbjct: 175 PER 177


>At5g12040.1 68418.m01408 carbon-nitrogen hydrolase family protein
           similar to Nit protein 2 [Homo sapiens] GI:9367116;
           contains Pfam profile PF00795: hydrolase,
           carbon-nitrogen family
          Length = 369

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 17/63 (26%), Positives = 30/63 (47%)
 Frame = +1

Query: 370 SKGTPLMSIRSPEYSETAQTPESIPEISPEMDSFSDIMPGTGLLTWGRVQLPVVVFYKE* 549
           SKG  L+ +  PE   +  + +S P  + E+D+  D  P T +L+    +L + +     
Sbjct: 117 SKGAKLVLL--PEIWNSPYSNDSFPVYAEEIDAGGDASPSTAMLSEVSKRLKITIIGGSI 174

Query: 550 PRR 558
           P R
Sbjct: 175 PER 177


>At5g14330.1 68418.m01675 expressed protein 
          Length = 128

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 4/46 (8%)
 Frame = -1

Query: 619 LRYSFICGSRVVIIESTE----LFAFSATLCRIPPLATAPFPTSAT 494
           +R++FIC    V++ + E           +  +PP+A AP P++AT
Sbjct: 63  IRFAFICIVLAVMVMTAESHNGTHHHGPAMAPMPPMAKAPSPSAAT 108


>At4g33560.1 68417.m04769 expressed protein
          Length = 95

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = -1

Query: 553 SATLCRIPPLATAPFPTSATRCLALYH*MNPSRVKF 446
           SAT  R  PL+T PF TS  + + L     P+ V+F
Sbjct: 61  SATSIRSKPLSTTPFETSFEKAMGL-SCFGPTTVRF 95


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,935,490
Number of Sequences: 28952
Number of extensions: 316625
Number of successful extensions: 1126
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1059
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1124
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1526202912
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)