Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021220
         (781 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    24   1.6  
DQ659249-1|ABG47447.1|  383|Tribolium castaneum chitinase 9 prot...    23   3.6  
EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic acetyl...    21   8.4  
EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic acetyl...    21   8.4  
AY873915-1|AAW67571.2|  384|Tribolium castaneum chitinase 16 pro...    21   8.4  
AY873914-1|AAW67570.1|  384|Tribolium castaneum chitinase 3 prot...    21   8.4  

>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +2

Query: 467 TPPPQTLPAPHSTTRSSYGPTSHGHG 544
           TP P   P  +    +S+  T++GHG
Sbjct: 267 TPSPSASPLAYQHEYNSFNWTANGHG 292


>DQ659249-1|ABG47447.1|  383|Tribolium castaneum chitinase 9
           protein.
          Length = 383

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +2

Query: 53  RPPLSKHTRIRIDPHVFTHL 112
           RP   K T + +DP + THL
Sbjct: 34  RPDNGKFTALDVDPTLCTHL 53


>EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           3 protein.
          Length = 311

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 6/10 (60%), Positives = 7/10 (70%)
 Frame = +1

Query: 85  HRSACLYAPP 114
           H  +CLY PP
Sbjct: 112 HNGSCLYVPP 121


>EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           2 protein.
          Length = 311

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 6/10 (60%), Positives = 7/10 (70%)
 Frame = +1

Query: 85  HRSACLYAPP 114
           H  +CLY PP
Sbjct: 112 HNGSCLYVPP 121


>AY873915-1|AAW67571.2|  384|Tribolium castaneum chitinase 16
           protein.
          Length = 384

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +2

Query: 53  RPPLSKHTRIRIDPHVFTHL 112
           RP   K T +  DP++ TH+
Sbjct: 35  RPDNGKFTALDTDPNLCTHI 54


>AY873914-1|AAW67570.1|  384|Tribolium castaneum chitinase 3
           protein.
          Length = 384

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +2

Query: 53  RPPLSKHTRIRIDPHVFTHL 112
           RP   K T +  DP++ TH+
Sbjct: 35  RPDNGKFTALDTDPNLCTHI 54


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,369
Number of Sequences: 336
Number of extensions: 3284
Number of successful extensions: 13
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21065107
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)