Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021220
         (781 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22E12.07 |rna1||Ran GAP Rna1|Schizosaccharomyces pombe|chr 1...    29   0.75 
SPBC582.07c |rpn7||19S proteasome regulatory subunit Rpn7|Schizo...    27   3.0  
SPAC57A10.07 |||conserved protein |Schizosaccharomyces pombe|chr...    27   3.0  
SPAC17A2.14 ||SPAC17G6.01|CorA family magnesium ion transporter|...    26   7.0  
SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal binuc...    26   7.0  

>SPAC22E12.07 |rna1||Ran GAP Rna1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 386

 Score = 29.1 bits (62), Expect = 0.75
 Identities = 16/47 (34%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
 Frame = +3

Query: 543 EDDV-KEMKKVFATWGRRMGKKLEMLKKSEVKETDDEPQHSENLKVE 680
           EDDV  E+++VF+T GR    +L+ +++   +E +DE + +E+   E
Sbjct: 318 EDDVVDEIREVFSTRGRGELDELDDMEELTDEEEEDEEEEAESQSPE 364


>SPBC582.07c |rpn7||19S proteasome regulatory subunit
           Rpn7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 409

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = +2

Query: 251 IENFSFDIQLLNDCASAAASAVLIPMCTCIRAEIAFG 361
           I NFS    LL DC S  +S  L+P    +R  +  G
Sbjct: 202 IRNFSGAADLLLDCMSTFSSTELLPYYDVVRYAVISG 238


>SPAC57A10.07 |||conserved protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 311

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 16/52 (30%), Positives = 26/52 (50%)
 Frame = +3

Query: 234 VRAFSKLKILVSTFNF*TTVPRPPLAQC*SPCVLV*EQKSRSVWRYVCVIGH 389
           +  ++ L +L   F   +T+  P L QC SP  LV  Q  +++   + V GH
Sbjct: 35  IALYASLILLCIFFTIFSTMSHPSL-QCFSPTSLVGAQPLKNLTHLIIVAGH 85


>SPAC17A2.14 ||SPAC17G6.01|CorA family magnesium ion
           transporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 617

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 17/79 (21%), Positives = 31/79 (39%), Gaps = 1/79 (1%)
 Frame = +3

Query: 492 HPTARLALVTALPAMVMEDDVKEMK-KVFATWGRRMGKKLEMLKKSEVKETDDEPQHSEN 668
           HP  R      L   +  ++ +E K  V   W ++M    E     E    D + +   N
Sbjct: 183 HPATRKLSRDELYLPISPNNAQEPKFSVLDEWTKKMVANFE-----EYSVEDVDKRRERN 237

Query: 669 LKVETTVAITGHYKKKQQW 725
            K+   + + G Y+ + +W
Sbjct: 238 RKLSEPLLVNGRYRVRDRW 256


>SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal
           binuclear cluster type |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 522

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +2

Query: 476 PQTLPAPHSTTRSSYGPTS 532
           PQ +P PH+T  + Y P+S
Sbjct: 296 PQHIPVPHNTEFAQYQPSS 314


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,929,212
Number of Sequences: 5004
Number of extensions: 52573
Number of successful extensions: 144
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)