Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021220
(781 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1512 + 27627740-27629009,27629111-27629256,27629842-276301... 31 0.78
02_05_0778 + 31695036-31695137,31695204-31695683 30 1.8
07_01_0584 + 4345134-4345237,4346165-4346267,4346397-4346466,434... 30 2.4
05_05_0256 - 23647736-23648947 30 2.4
12_01_0064 - 553733-553821,554186-554277,554332-554360,554554-55... 29 3.1
11_01_0062 - 476027-476044,476791-477195,477287-477574,477653-47... 29 3.1
05_05_0250 + 23609594-23610784 29 4.1
10_06_0039 - 9966744-9967535,9968241-9968482,9969021-9969223,996... 28 7.2
01_01_0884 - 6956337-6956431,6956514-6957651 28 7.2
09_06_0192 - 21450158-21450276,21451084-21451573,21451750-214518... 28 9.6
>08_02_1512 +
27627740-27629009,27629111-27629256,27629842-27630101,
27630346-27630412,27630511-27630545,27630818-27631587,
27631633-27631793
Length = 902
Score = 31.5 bits (68), Expect = 0.78
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Frame = +2
Query: 461 AETPPPQ--TLPAPHSTTRSSYGPTSHGHGGRCQRNEEGI 574
AE PPP+ PAPH+ T +Y P +G+G + E G+
Sbjct: 148 AEPPPPRPAAAPAPHAATLYTYAP-PYGYGPGAGQYEYGV 186
>02_05_0778 + 31695036-31695137,31695204-31695683
Length = 193
Score = 30.3 bits (65), Expect = 1.8
Identities = 17/35 (48%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = -3
Query: 110 GA*RHADRCECGY-VLIRAGADWDAGSDAR*ALWL 9
GA D+ EC Y V IR G+ W AG+DA L L
Sbjct: 44 GAVAGGDKMECVYTVYIRTGSIWKAGTDANITLEL 78
>07_01_0584 +
4345134-4345237,4346165-4346267,4346397-4346466,
4346552-4346590,4346684-4346801,4346894-4346951,
4347031-4347095,4347281-4347341,4347678-4347779,
4348005-4348070,4348399-4348443,4348540-4348797,
4349289-4349501,4350103-4350411,4350461-4350613
Length = 587
Score = 29.9 bits (64), Expect = 2.4
Identities = 16/60 (26%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Frame = +3
Query: 555 KEMKKVFATWGRRMGKKLEMLKKSEVKETDDEPQHSENLKVETTVAI-TGHYKKKQQWKM 731
+EM+KVF +G + L K++ E +D+ +H ++LK+ + G + Q ++M
Sbjct: 359 EEMRKVFGNFGFANEYQSSKLCKAKFSECEDKMEHLQSLKLPSMAKFNAGFLRCNQSFEM 418
>05_05_0256 - 23647736-23648947
Length = 403
Score = 29.9 bits (64), Expect = 2.4
Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 7/53 (13%)
Frame = +2
Query: 461 AETPPPQTLPAPHSTTRSSYGPTSHGHGGRCQRNEEGI-------RYMGSANG 598
A PPQ P P SS GPT G C+R++ G+ RY G+ +G
Sbjct: 41 AAPAPPQQRPLPWILVPSSGGPTFSCAVGGCRRHDFGVPDYAREARYFGTYSG 93
>12_01_0064 -
553733-553821,554186-554277,554332-554360,554554-554958,
555046-555333,555412-555499,556428-556626,556738-556876,
556991-557041
Length = 459
Score = 29.5 bits (63), Expect = 3.1
Identities = 15/36 (41%), Positives = 18/36 (50%)
Frame = +2
Query: 29 RQNPRPSPRPPLSKHTRIRIDPHVFTHLPVITYSRL 136
RQNP P P +S HT I P V T L + + L
Sbjct: 274 RQNPLPPEVPIVSFHTEASITPSVLTALSHVAHLEL 309
>11_01_0062 -
476027-476044,476791-477195,477287-477574,477653-477830,
478005-478133,478531-478729,478832-478970,479130-479195,
480459-480580,480672-480742,480819-480903,481335-481453,
481577-481687,481945-482117,482375-482446,482768-482862,
483361-483450,483550-483646
Length = 818
Score = 29.5 bits (63), Expect = 3.1
Identities = 15/36 (41%), Positives = 18/36 (50%)
Frame = +2
Query: 29 RQNPRPSPRPPLSKHTRIRIDPHVFTHLPVITYSRL 136
RQNP P P +S HT I P V T L + + L
Sbjct: 697 RQNPLPPEVPIVSFHTEASITPSVLTALSHVAHLEL 732
>05_05_0250 + 23609594-23610784
Length = 396
Score = 29.1 bits (62), Expect = 4.1
Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 7/53 (13%)
Frame = +2
Query: 461 AETPPPQTLPAPHSTTRSSYGPTSHGHGGRCQRNEEGI-------RYMGSANG 598
A PPQ P P S+ GPT G C+R++ G+ RY G+ +G
Sbjct: 41 AAPAPPQQRPVPWILVPSAGGPTFSCAVGGCRRHDFGVPDYAREARYFGTYSG 93
>10_06_0039 -
9966744-9967535,9968241-9968482,9969021-9969223,
9969333-9970645
Length = 849
Score = 28.3 bits (60), Expect = 7.2
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +2
Query: 470 PPPQTLPAPHSTTRSSYGPTSHGHGG 547
PPP T+ A S++RS P + G GG
Sbjct: 76 PPPNTVAADVSSSRSGPDPRARGGGG 101
>01_01_0884 - 6956337-6956431,6956514-6957651
Length = 410
Score = 28.3 bits (60), Expect = 7.2
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +3
Query: 552 VKEMKKVFATWGRRMGKKLEMLKKSEVKETDDEPQHS 662
+ ++K ++ RR G++L SE +ETD EP S
Sbjct: 230 LNKIKPLYVKVSRRYGERLRFASASEGEETDLEPDPS 266
>09_06_0192 -
21450158-21450276,21451084-21451573,21451750-21451862,
21451992-21452376,21452461-21452529,21453165-21453264,
21454465-21454637,21454737-21454782,21454879-21454954,
21455160-21455196,21455799-21456041
Length = 616
Score = 27.9 bits (59), Expect = 9.6
Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 7/58 (12%)
Frame = +2
Query: 464 ETPPPQTLPAPHSTTRSSYGPTSHGHGGRCQ--RNEEGIRYM-----GSANG*ETRNA 616
E PPP P P +TR + G G R E+ +R + GSA G +TR A
Sbjct: 31 EPPPPPPPPQPRRSTRRNPAGVDSGDEGTAPGGRREKKLRLVMGLPDGSAKGEKTRKA 88
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,442,273
Number of Sequences: 37544
Number of extensions: 405225
Number of successful extensions: 1515
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1441
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1511
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2091906552
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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