Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021220
         (781 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52679| Best HMM Match : CBM_X (HMM E-Value=0.23)                    30   1.8  
SB_26641| Best HMM Match : FMN_dh (HMM E-Value=0.022)                  29   3.2  
SB_48790| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.6  
SB_42739| Best HMM Match : 7tm_1 (HMM E-Value=3.9e-21)                 29   5.6  
SB_31213| Best HMM Match : SNF2_N (HMM E-Value=0)                      28   9.8  

>SB_52679| Best HMM Match : CBM_X (HMM E-Value=0.23)
          Length = 227

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +2

Query: 470 PPPQTLPAPHSTTRSSYGP 526
           PPP T+P P + +R+S GP
Sbjct: 116 PPPSTIPTPQTVSRASTGP 134


>SB_26641| Best HMM Match : FMN_dh (HMM E-Value=0.022)
          Length = 181

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 10/27 (37%), Positives = 19/27 (70%)
 Frame = +3

Query: 642 DDEPQHSENLKVETTVAITGHYKKKQQ 722
           D++ QH++N K+  ++  T H +K+QQ
Sbjct: 43  DNKEQHTDNSKINNSIQPTKHRRKRQQ 69


>SB_48790| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 109

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -3

Query: 416 RFDPRNRRIVTDHANIAPHRTRFL 345
           R  P N RI+ DH+ I P R+R L
Sbjct: 42  RILPDNSRIIPDHSRIIPDRSRIL 65


>SB_42739| Best HMM Match : 7tm_1 (HMM E-Value=3.9e-21)
          Length = 683

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = -3

Query: 770 NLLREAESDVLRPHFPLLFLFVMASNSYRCFDF 672
           NLL + ESD+LR  + ++ +FV+    Y+ F F
Sbjct: 302 NLLIDLESDLLRMIYAIILIFVVCYIPYQVFYF 334


>SB_31213| Best HMM Match : SNF2_N (HMM E-Value=0)
          Length = 919

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 12/26 (46%), Positives = 13/26 (50%)
 Frame = +2

Query: 470 PPPQTLPAPHSTTRSSYGPTSHGHGG 547
           P   T P  HST+     P  HGHGG
Sbjct: 396 PVTPTSPLKHSTSGPFSPPRHHGHGG 421


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,125,403
Number of Sequences: 59808
Number of extensions: 458343
Number of successful extensions: 1569
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1437
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1566
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2131907602
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)