Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021220
         (781 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z72510-6|CAM84693.1| 2892|Caenorhabditis elegans Hypothetical pr...    32   0.53 
Z72510-5|CAM84692.1| 3095|Caenorhabditis elegans Hypothetical pr...    32   0.53 
Z72507-18|CAM84805.1| 2892|Caenorhabditis elegans Hypothetical p...    32   0.53 
Z72507-17|CAM84804.1| 3095|Caenorhabditis elegans Hypothetical p...    32   0.53 
U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical pr...    29   2.8  
AC006679-13|AAL38965.1|  644|Caenorhabditis elegans Coelomocyte ...    29   2.8  
AC084153-9|AAK84592.1|   90|Caenorhabditis elegans Hypothetical ...    29   3.7  
AC006651-7|AAX22287.1|  786|Caenorhabditis elegans Hypothetical ...    29   3.7  
AC006651-6|AAF39868.1|  833|Caenorhabditis elegans Hypothetical ...    29   3.7  
U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-...    29   4.9  
U80446-1|AAB37802.2| 1198|Caenorhabditis elegans Spindle defecti...    28   6.5  
AL032642-3|CAA21654.1|  336|Caenorhabditis elegans Hypothetical ...    28   6.5  

>Z72510-6|CAM84693.1| 2892|Caenorhabditis elegans Hypothetical protein
            F53B7.5b protein.
          Length = 2892

 Score = 31.9 bits (69), Expect = 0.53
 Identities = 14/27 (51%), Positives = 19/27 (70%)
 Frame = +2

Query: 467  TPPPQTLPAPHSTTRSSYGPTSHGHGG 547
            +P P T PAP STT+SS GP++  + G
Sbjct: 2673 SPAPITTPAPSSTTQSSSGPSASCNTG 2699


>Z72510-5|CAM84692.1| 3095|Caenorhabditis elegans Hypothetical protein
            F53B7.5a protein.
          Length = 3095

 Score = 31.9 bits (69), Expect = 0.53
 Identities = 14/27 (51%), Positives = 19/27 (70%)
 Frame = +2

Query: 467  TPPPQTLPAPHSTTRSSYGPTSHGHGG 547
            +P P T PAP STT+SS GP++  + G
Sbjct: 2673 SPAPITTPAPSSTTQSSSGPSASCNTG 2699


>Z72507-18|CAM84805.1| 2892|Caenorhabditis elegans Hypothetical
            protein F53B7.5b protein.
          Length = 2892

 Score = 31.9 bits (69), Expect = 0.53
 Identities = 14/27 (51%), Positives = 19/27 (70%)
 Frame = +2

Query: 467  TPPPQTLPAPHSTTRSSYGPTSHGHGG 547
            +P P T PAP STT+SS GP++  + G
Sbjct: 2673 SPAPITTPAPSSTTQSSSGPSASCNTG 2699


>Z72507-17|CAM84804.1| 3095|Caenorhabditis elegans Hypothetical
            protein F53B7.5a protein.
          Length = 3095

 Score = 31.9 bits (69), Expect = 0.53
 Identities = 14/27 (51%), Positives = 19/27 (70%)
 Frame = +2

Query: 467  TPPPQTLPAPHSTTRSSYGPTSHGHGG 547
            +P P T PAP STT+SS GP++  + G
Sbjct: 2673 SPAPITTPAPSSTTQSSSGPSASCNTG 2699


>U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical
           protein C01G8.9a protein.
          Length = 1724

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +2

Query: 461 AETPPPQTLPAPHSTTRSSYGPTS 532
           A TP P T PAP + + S   PTS
Sbjct: 578 ASTPAPSTTPAPQAASSSQAAPTS 601


>AC006679-13|AAL38965.1|  644|Caenorhabditis elegans Coelomocyte
           uptake defective protein5, isoform b protein.
          Length = 644

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 14/28 (50%), Positives = 19/28 (67%)
 Frame = +2

Query: 470 PPPQTLPAPHSTTRSSYGPTSHGHGGRC 553
           PPP  L +P  TTRS+Y P++  + GRC
Sbjct: 587 PPPSELGSP--TTRSAYAPSNLLNLGRC 612


>AC084153-9|AAK84592.1|   90|Caenorhabditis elegans Hypothetical
           protein Y22D7AL.3 protein.
          Length = 90

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 12/28 (42%), Positives = 13/28 (46%)
 Frame = +2

Query: 470 PPPQTLPAPHSTTRSSYGPTSHGHGGRC 553
           PPP   P P         PTS+ HGG C
Sbjct: 15  PPPPPKPKPIVVNDQPRPPTSNDHGGSC 42


>AC006651-7|AAX22287.1|  786|Caenorhabditis elegans Hypothetical
           protein H06I04.3c protein.
          Length = 786

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 13/35 (37%), Positives = 24/35 (68%)
 Frame = +3

Query: 534 MVMEDDVKEMKKVFATWGRRMGKKLEMLKKSEVKE 638
           M   + V+EMKKV+A   R+  KK+E+++ ++ K+
Sbjct: 737 MEHSEKVREMKKVYANATRKEKKKVELVRMTKGKK 771


>AC006651-6|AAF39868.1|  833|Caenorhabditis elegans Hypothetical
           protein H06I04.3a protein.
          Length = 833

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 13/35 (37%), Positives = 24/35 (68%)
 Frame = +3

Query: 534 MVMEDDVKEMKKVFATWGRRMGKKLEMLKKSEVKE 638
           M   + V+EMKKV+A   R+  KK+E+++ ++ K+
Sbjct: 737 MEHSEKVREMKKVYANATRKEKKKVELVRMTKGKK 771


>U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-1
            x-hybridizingprotein 1, isoform a protein.
          Length = 1876

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +2

Query: 332  TCIRAEIAFGVALCLRDRSQCACSA 406
            TC   EI  G ++C  DR +C C+A
Sbjct: 1394 TCKNGEICAGGSICDYDRKRCICAA 1418


>U80446-1|AAB37802.2| 1198|Caenorhabditis elegans Spindle defective
           protein 5 protein.
          Length = 1198

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
 Frame = +3

Query: 540 MEDDVKEMKKVFATWGRRMG--KKLEMLKKSEVKETDDEPQHSENLKVETTVAITG 701
           ++ +  E+KK     G R+   KK +   KSE+    +E + S+NL  E +  + G
Sbjct: 822 LKHEENELKKTITDMGMRLNEAKKSDEFLKSELSTALEEEKKSQNLADELSEELNG 877


>AL032642-3|CAA21654.1|  336|Caenorhabditis elegans Hypothetical
           protein Y48A6C.4 protein.
          Length = 336

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 24/76 (31%), Positives = 33/76 (43%), Gaps = 3/76 (3%)
 Frame = +3

Query: 555 KEMKKVFATWGRRMGKKLEMLKKSEVK-ETDDEPQHSENLKVETTVAITGHY--KKKQQW 725
           K++KK   T      K++ +  + E K ETDD P     L ++      GH+  K K   
Sbjct: 22  KKLKKTTTTDTTIKAKRVVLATQLEEKVETDDNPLSFRGLTLDELCKQMGHFNAKVKMNA 81

Query: 726 KMGAKYIGFSLP*KVN 773
             G K I  S P  VN
Sbjct: 82  IQGLKQILTSRPDLVN 97


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,709,689
Number of Sequences: 27780
Number of extensions: 323124
Number of successful extensions: 1146
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1051
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1143
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1882685842
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)