Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021220
         (781 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           23   2.4  
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    22   7.4  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    22   7.4  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    22   7.4  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    21   9.7  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    21   9.7  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   9.7  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   9.7  

>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +1

Query: 517 LRPYQPWSWRTM 552
           LRPY  W W T+
Sbjct: 228 LRPYPNWEWHTV 239


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = +1

Query: 82  SHRSACLYAPP 114
           +H  +CLY PP
Sbjct: 94  THNGSCLYVPP 104


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = +1

Query: 82  SHRSACLYAPP 114
           +H  +CLY PP
Sbjct: 162 THNGSCLYVPP 172


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = +1

Query: 82  SHRSACLYAPP 114
           +H  +CLY PP
Sbjct: 162 THNGSCLYVPP 172


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 6/9 (66%), Positives = 7/9 (77%)
 Frame = +1

Query: 517 LRPYQPWSW 543
           L+PY  WSW
Sbjct: 108 LQPYPDWSW 116


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 6/9 (66%), Positives = 7/9 (77%)
 Frame = +1

Query: 517 LRPYQPWSW 543
           L+PY  WSW
Sbjct: 108 LQPYPDWSW 116


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = +3

Query: 249 KLKILVSTFNF*TTVPRPPLAQC*SPC 329
           +L++ +S   F    P PP + C  PC
Sbjct: 565 ELRLNMSAIQFKLGHPEPPESVCSLPC 591


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = -1

Query: 436 ATRSLPFASTRGTGAL*P 383
           AT +LP AS  GTG   P
Sbjct: 224 ATTTLPAASATGTGPATP 241


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 203,201
Number of Sequences: 438
Number of extensions: 3797
Number of successful extensions: 15
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24518154
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)