Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021220
         (781 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g62500.1 68414.m07052 protease inhibitor/seed storage/lipid t...    29   2.6  
At3g13810.1 68416.m01744 zinc finger (C2H2 type) family protein ...    28   6.0  
At1g70470.1 68414.m08108 expressed protein                             28   6.0  
At5g05570.1 68418.m00605 transducin family protein / WD-40 repea...    28   8.0  
At2g20850.1 68415.m02457 leucine-rich repeat protein kinase, put...    28   8.0  

>At1g62500.1 68414.m07052 protease inhibitor/seed storage/lipid
           transfer protein (LTP) family protein similar to auxin
           down regulated GB:X69640 GI:296442 from [Glycine max];
           contains Pfam profile PF00234: Protease inhibitor/seed
           storage/LTP family
          Length = 297

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 14/26 (53%), Positives = 16/26 (61%)
 Frame = +2

Query: 470 PPPQTLPAPHSTTRSSYGPTSHGHGG 547
           PPP T+P P S+    YGP S G GG
Sbjct: 180 PPPVTVPPP-SSGYPPYGPPSGGGGG 204


>At3g13810.1 68416.m01744 zinc finger (C2H2 type) family protein
           similar to finger protein pcp1 GB:S48856 from [Solanum
           tuberosum]  contains Pfam domain, PF00096: Zinc finger,
           C2H2 type
          Length = 513

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +2

Query: 473 PPQTLPAPHSTTRSSYGPTSHGHGG 547
           PP   P PH+ T S+  P++ G GG
Sbjct: 329 PPWLAPQPHALTSSNPNPSNGGGGG 353


>At1g70470.1 68414.m08108 expressed protein
          Length = 154

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +2

Query: 464 ETPPPQTLPAPHSTTRSSYGPTSHGHGG 547
           E   PQ  P+  S+T SS+ P+S G  G
Sbjct: 7   EFQQPQVYPSTSSSTSSSFSPSSSGSSG 34


>At5g05570.1 68418.m00605 transducin family protein / WD-40 repeat
           family protein similar to unknown protein (pir||T04661);
           contains Pfam PF00400: WD domain, G-beta repeat (4
           copies, 2 weak)|8683726|gb|AV524198.1|AV524198
          Length = 1124

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = +2

Query: 23  SGRQNPRPSPRPPLSKHTRIR-IDPHVFTHLPVITYSRLL 139
           SG QNP P   PP         +DPH+ TH  + + + LL
Sbjct: 11  SGGQNPPPPIAPPPRGCLMAEDLDPHIITHSGIPSTASLL 50


>At2g20850.1 68415.m02457 leucine-rich repeat protein kinase,
           putative contains Pfam domains PF00560: Leucine Rich
           Repeat and PF00069: Protein kinase domain
          Length = 772

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 4/32 (12%)
 Frame = +2

Query: 461 AETPPPQTLPAPHSTTRSSYGP----TSHGHG 544
           A +P P+T P+P S  R  +GP     S GHG
Sbjct: 251 APSPSPETPPSPTSPKRPFFGPPSPNASAGHG 282


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,705,933
Number of Sequences: 28952
Number of extensions: 297802
Number of successful extensions: 993
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 924
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 992
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1746037600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)