Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021219
         (776 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar...    27   2.3  
SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|...    26   5.2  
SPBP8B7.08c |||leucine carboxyl methyltransferase |Schizosacchar...    26   5.2  
SPAC12B10.05 |||metallopeptidase|Schizosaccharomyces pombe|chr 1...    26   5.2  
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    26   6.9  
SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces...    26   6.9  
SPAC3A11.03 |||methyltransferase |Schizosaccharomyces pombe|chr ...    25   9.2  
SPCC553.04 |cyp9||WD repeat containing cyclophilin family peptid...    25   9.2  

>SPBC28E12.03 |rga4||GTPase activating protein
           Rga4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 933

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = +2

Query: 203 QVGS*RLVGTGMHEI-PQYTSIRPFEIVFHDKMIADLRYRLNNHRKPVPP 349
           +VG+  L  T +  I  Q T + P    F  +++ADL YRL+  RK   P
Sbjct: 494 EVGTLLLEATSLASIIEQQTPVSPE--AFKQELVADLNYRLDYLRKSFQP 541


>SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 732

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 15/57 (26%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
 Frame = +3

Query: 3   HILLFSKY*RTSVLYFYSSIFW----KYVVVSYFFKEYATFETIMGGLFGLVITSCL 161
           HIL+   Y + S   FY+S+F+     ++ V Y   +    +  +  LF  ++ +CL
Sbjct: 175 HILILLGYFQCSYSVFYASVFYILLGVFIRVFYLVNKEKFEKKELAFLFSSIVVACL 231


>SPBP8B7.08c |||leucine carboxyl methyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 310

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = -2

Query: 535 DGHKPSVCTNKMYVQSLYVGHILGIFVQEY 446
           + HKP +     YV++  + HIL  F++ +
Sbjct: 36  NSHKPPIINRGTYVRTWSIDHILQKFIESF 65


>SPAC12B10.05 |||metallopeptidase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 486

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +2

Query: 437 EREIFLNKYPQYVTNIQGLDIHFISTDRRLMPIKK 541
           +REI    YP  + +  GL+IH  ST+    P++K
Sbjct: 393 KREITDILYPHSIGHEIGLEIHDCSTNNGYQPLRK 427


>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1854

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
 Frame = +3

Query: 132  LFGLVITSCLTIELLASQNTEPAYKLDPNAW--WGPECTKYHNIPAYD 269
            +FG ++ SC    +L++      Y   PN W  W P    + N P YD
Sbjct: 1099 VFGGLLYSCNDDNVLSASQCVLEYASTPNNWEVWAPRV--WSNPPDYD 1144


>SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1155

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 28/115 (24%), Positives = 47/115 (40%), Gaps = 6/115 (5%)
 Frame = -2

Query: 541 FLDGHKPSVCTNKMYVQSLYVGHILGIFVQEYFPFLKGILFCPKSKPAI*DIRVKAVLKS 362
           F D  +P V     Y  S  V H +    Q Y     G++F   +       ++ ++++ 
Sbjct: 478 FSDNFRPYV-ELLPYKNSRMVTHSIRFLEQSYTNVSNGLVFVNTTTDVN---KLPSIIEF 533

Query: 361 DPF*RWHGFAMI-IKSISEVRYHLIMENNFKGSYAGILWYF-----VHSGPHQAL 215
               +  G A+  IKS+S   + L M  NF  +Y   + Y      +HS P+  L
Sbjct: 534 PAASKLRGTAISQIKSLSNGNFSLYMTGNFSDNYGNNVVYMDSLNHLHSFPNNGL 588


>SPAC3A11.03 |||methyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 247

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +3

Query: 72  YVVVSYFFKEYATFETIMGGLFG 140
           Y+VVSYF   Y+ ++ I+ G+ G
Sbjct: 5   YLVVSYFCNRYSCWQLIIIGITG 27


>SPCC553.04 |cyp9||WD repeat containing cyclophilin family
           peptidyl-prolyl cis-trans isomerase
           Cyp9|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 610

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 14/57 (24%), Positives = 24/57 (42%)
 Frame = +2

Query: 269 PFEIVFHDKMIADLRYRLNNHRKPVPPLEGIGFEYGFNSNILDGWLRFWAEEYPFKE 439
           P    F      ++ Y +  H  PV  L  +     F S  + G + +W+ E PF++
Sbjct: 158 PLIFFFESGGDGEVLYTVKKHTAPVHCLRYLSTLDCFLSIDIGGMVEYWSPEEPFQK 214


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,479,896
Number of Sequences: 5004
Number of extensions: 79371
Number of successful extensions: 220
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 210
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 220
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)