Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021219
         (776 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0456 + 3522599-3523921,3524005-3524027,3524097-3525265,352...    31   1.3  
02_02_0728 + 13416481-13416889,13416979-13417065,13417220-134173...    29   4.1  
09_04_0615 + 18972227-18972250,18972293-18972397,18973492-189735...    29   5.4  
03_05_0055 - 20316184-20317349,20317786-20317926,20318097-203182...    29   5.4  
12_02_0281 + 16744690-16744727,16744744-16745611,16746195-167467...    28   9.5  

>11_01_0456 +
           3522599-3523921,3524005-3524027,3524097-3525265,
           3525373-3525737
          Length = 959

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 27/120 (22%), Positives = 52/120 (43%), Gaps = 2/120 (1%)
 Frame = +2

Query: 155 LSNNRTSG-VSKYRTSIQVGS*RLVGTGMHEIPQYTSIRPFEIVFHDKMIADLRYRLNNH 331
           LSNN   G +  +  S  +    L+  G H I Q+ +  P  +   D    +L   + + 
Sbjct: 129 LSNNTLQGKIPDFTNSSNLKV--LLLNGNHLIGQFNNNFPPHLQGLDLSFNNLTGTIPSS 186

Query: 332 RKPVPPLEGIGF-EYGFNSNILDGWLRFWAEEYPFKEREIFLNKYPQYVTNIQGLDIHFI 508
              +  L G+GF       NI + + +F +  Y    + +   ++PQ + N+  LD+ ++
Sbjct: 187 LANITELLGVGFMSNNIKGNIPNDFSKFVSIGYLAASQNMLSGRFPQAILNLSTLDVLYL 246


>02_02_0728 +
           13416481-13416889,13416979-13417065,13417220-13417351,
           13417474-13417539,13417754-13418919
          Length = 619

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 9/11 (81%), Positives = 11/11 (100%)
 Frame = +3

Query: 231 PECTKYHNIPA 263
           PEC+KYHN+PA
Sbjct: 312 PECSKYHNVPA 322


>09_04_0615 +
           18972227-18972250,18972293-18972397,18973492-18973584,
           18973887-18973993,18974107-18974157,18974675-18974928,
           18975176-18975221,18975896-18976127
          Length = 303

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 13/50 (26%), Positives = 27/50 (54%)
 Frame = -2

Query: 637 NLCFYLHLSSVVLFRRIPSQILASREESITELFLDGHKPSVCTNKMYVQS 488
           NLC++L + S  LF  +  ++  S   + T+LF+   + +   N + ++S
Sbjct: 55  NLCYFLDVRSNCLFMLMLGKVRKSMPYASTDLFVSVRQQNTIANSVLLES 104


>03_05_0055 -
           20316184-20317349,20317786-20317926,20318097-20318222,
           20318382-20318429,20318536-20318640,20318746-20318890
          Length = 576

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 9/11 (81%), Positives = 11/11 (100%)
 Frame = +3

Query: 231 PECTKYHNIPA 263
           PECTKYH++PA
Sbjct: 269 PECTKYHDVPA 279


>12_02_0281 +
           16744690-16744727,16744744-16745611,16746195-16746725,
           16747737-16748549
          Length = 749

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = -2

Query: 601 LFRRIPSQILASREESITELFLDGHKPSVCTNKMYV 494
           L RR+P  + A+ +E + +   +  KPS+CT   Y+
Sbjct: 521 LVRRVP--LFANMDERLLDAICERLKPSLCTEATYI 554


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,430,889
Number of Sequences: 37544
Number of extensions: 474761
Number of successful extensions: 1165
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1165
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2080154268
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)