Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021219
(776 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_8001| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.4
SB_14304| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.2
SB_4873| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.2
SB_50643| Best HMM Match : Phosphodiest (HMM E-Value=0) 29 4.2
SB_49586| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.2
SB_59515| Best HMM Match : Pox_A_type_inc (HMM E-Value=3.2e-31) 29 5.5
SB_10638| Best HMM Match : Myosin_N (HMM E-Value=1.5e-06) 28 7.3
SB_38465| Best HMM Match : Nitrophorin (HMM E-Value=0.75) 28 7.3
SB_56294| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.7
SB_48808| Best HMM Match : DEAD (HMM E-Value=0.029) 28 9.7
SB_19291| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.7
>SB_8001| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 326
Score = 30.7 bits (66), Expect = 1.4
Identities = 20/72 (27%), Positives = 39/72 (54%), Gaps = 3/72 (4%)
Frame = -3
Query: 573 WPAVKNQ*R-NYFLMGISLLSVLIKCMSNPC-MLVTYWGYLFKNISLSL-KGYSSAQNRS 403
W AV Q R +YF++G+S +++ C+S P + + Y + ++++ SL + Y + +
Sbjct: 48 WRAVNLQSRLHYFVVGLSAADIMVGCVSIPMWVYILYLTWRKRHMAFSLGRAYETMDVFA 107
Query: 402 QPSKILELKPYS 367
+ IL L S
Sbjct: 108 AVNSILHLMAVS 119
>SB_14304| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1219
Score = 29.5 bits (63), Expect = 3.2
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Frame = -2
Query: 436 LKGILFCPKSKPAI*DIRVKAVL---KSDPF*RWHGFAMIIKSISEVRYHLIMENNFKGS 266
+KG+L C + A D++++ +L K++P GFA + S+ N F GS
Sbjct: 177 VKGVLHCHRKGIAHRDLKLENILLSRKNEPIISDFGFARYVGGSSDTCMTRPRSNTFCGS 236
Query: 265 YA 260
YA
Sbjct: 237 YA 238
>SB_4873| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 331
Score = 29.5 bits (63), Expect = 3.2
Identities = 9/30 (30%), Positives = 18/30 (60%)
Frame = -3
Query: 549 RNYFLMGISLLSVLIKCMSNPCMLVTYWGY 460
+NY++ +S +L+ + P ++ TYW Y
Sbjct: 48 QNYYIFSLSCSDMLMGLAAEPLLIATYWHY 77
>SB_50643| Best HMM Match : Phosphodiest (HMM E-Value=0)
Length = 471
Score = 29.1 bits (62), Expect = 4.2
Identities = 26/87 (29%), Positives = 38/87 (43%), Gaps = 7/87 (8%)
Frame = +2
Query: 239 HEIPQYTSIRPFEIVFHDKMIADLRYRLNNHRKPVPPLEGIGFEYGFNS-----NILDGW 403
H I +Y ++ V+ + I + + NN R P P GF YGF N+ D W
Sbjct: 321 HMIQKYPQVK----VYKKEEIPEAFHYKNNRRVP-PIYVSAGFGYGFKPRRAWFNVSDDW 375
Query: 404 LRFWAEEYPFKER--EIFLNKYPQYVT 478
+ + YP ER IF + P + T
Sbjct: 376 V-YGYHGYPSDERMGAIFYARGPAFKT 401
>SB_49586| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 247
Score = 29.1 bits (62), Expect = 4.2
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = -3
Query: 702 WSDRSV*ISKPW*SRSYYFDSKISAFIYTCQVWYCFVE 589
WSDR V ++ + FDSK+ + ++ +V Y VE
Sbjct: 171 WSDRLVIVASQKERSKFLFDSKLDSNVFLSEVAYFIVE 208
>SB_59515| Best HMM Match : Pox_A_type_inc (HMM E-Value=3.2e-31)
Length = 2122
Score = 28.7 bits (61), Expect = 5.5
Identities = 19/41 (46%), Positives = 24/41 (58%)
Frame = +3
Query: 552 IDSSRLARICEGILRNNTTLDKCK*KQRFCCRSNSSYSTRV 674
+DSS+ + E RN T LD K RF RS+S YS+RV
Sbjct: 1998 LDSSKYDQR-ESTRRNETELD----KDRFASRSSSRYSSRV 2033
>SB_10638| Best HMM Match : Myosin_N (HMM E-Value=1.5e-06)
Length = 1977
Score = 28.3 bits (60), Expect = 7.3
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -1
Query: 263 CWYIVVFRAFRSPPSVRIQLVCWFCIL 183
C YIV+ RA+ S SVRI C + ++
Sbjct: 1500 CIYIVIARAYTSTLSVRIHCQCVYVVI 1526
>SB_38465| Best HMM Match : Nitrophorin (HMM E-Value=0.75)
Length = 1167
Score = 28.3 bits (60), Expect = 7.3
Identities = 18/54 (33%), Positives = 22/54 (40%), Gaps = 3/54 (5%)
Frame = +3
Query: 552 IDSSRLARICEGILRNNTTLDKCK*KQRFCCR---SNSSYSTRVWIFRRCGQTR 704
+DS R AR C+ I NT + CC S ST + R C TR
Sbjct: 1085 LDSLRYARFCQKISTGNTQVQPESLPPNICCSHLPQPSCVSTSTAVERYCTSTR 1138
>SB_56294| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 520
Score = 27.9 bits (59), Expect = 9.7
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +1
Query: 601 IPHLTSVNKSRDFAVEVIAPTL 666
IPH + KS FA +VIAPT+
Sbjct: 267 IPHPIPMQKSDSFATDVIAPTV 288
>SB_48808| Best HMM Match : DEAD (HMM E-Value=0.029)
Length = 498
Score = 27.9 bits (59), Expect = 9.7
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -3
Query: 213 DPTCMLVLYFETPEVLLLDKTLSL 142
DP+C + + TPE+L+ D TL +
Sbjct: 315 DPSCPFKILYVTPEILVNDHTLQM 338
>SB_19291| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1258
Score = 27.9 bits (59), Expect = 9.7
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = +3
Query: 36 SVLYFYSSIFWKYVVVSYFFKEYATFETIMGGLFGLVITSCLTI 167
++L+ SS+FWK + + + GL+GLVI + I
Sbjct: 986 ALLWAISSVFWKAKNEDIHYTVAGIWNNLFAGLYGLVIFGLMFI 1029
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,140,232
Number of Sequences: 59808
Number of extensions: 556505
Number of successful extensions: 1328
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1299
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1328
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2119930593
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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