Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021219
         (776 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U64852-7|AAB04970.1|  452|Caenorhabditis elegans Hypothetical pr...    69   3e-12
Z74029-6|CAM84812.1|  457|Caenorhabditis elegans Hypothetical pr...    54   2e-07
AC006776-1|AAF60626.2|  616|Caenorhabditis elegans Hypothetical ...    31   0.92 
Z73898-8|CAJ90496.1|  431|Caenorhabditis elegans Hypothetical pr...    28   6.5  
Z73898-7|CAA98070.1|  577|Caenorhabditis elegans Hypothetical pr...    28   6.5  
AF077539-1|AAK84580.2|  550|Caenorhabditis elegans Hypothetical ...    28   6.5  
AC006607-9|AAF60368.2|  995|Caenorhabditis elegans Hypothetical ...    28   6.5  
Z81468-2|CAN99666.1|  950|Caenorhabditis elegans Hypothetical pr...    28   8.6  
Z81468-1|CAB03875.3| 1010|Caenorhabditis elegans Hypothetical pr...    28   8.6  
Z73098-10|CAA97336.2|  391|Caenorhabditis elegans Hypothetical p...    28   8.6  
AF125442-2|AAD12792.1|  360|Caenorhabditis elegans Serpentine re...    28   8.6  

>U64852-7|AAB04970.1|  452|Caenorhabditis elegans Hypothetical
           protein W01A11.1 protein.
          Length = 452

 Score = 69.3 bits (162), Expect = 3e-12
 Identities = 33/88 (37%), Positives = 52/88 (59%), Gaps = 1/88 (1%)
 Frame = +2

Query: 248 PQYTSIRPFEIVFHDKMIADLRYRLNNHRKPVPPLEGIG-FEYGFNSNILDGWLRFWAEE 424
           P  T I+PF++     +I DL++RL N R     LE    F YGFNS  L     +W  +
Sbjct: 44  PDNTEIKPFKVNVEQSVIDDLKHRLQNARISHSVLEDSDDFYYGFNSKQLLKLRDYWLNK 103

Query: 425 YPFKEREIFLNKYPQYVTNIQGLDIHFI 508
           Y ++++E  +N++PQ+ T I+GL +HF+
Sbjct: 104 YDWRKQEATINQFPQFKTEIEGLQVHFL 131



 Score = 68.5 bits (160), Expect = 5e-12
 Identities = 30/62 (48%), Positives = 43/62 (69%), Gaps = 3/62 (4%)
 Frame = +1

Query: 529 AHQEIVPLLILHGWPGSVREFYETIPHLTSVNK---SRDFAVEVIAPTLPGFGYSDAAVR 699
           +++ + P+L+ HGWPG+V EFY+ IP LT   K     DFA EVIAP++PG+G+SD   +
Sbjct: 138 SYKNVKPILVAHGWPGNVFEFYKFIPLLTDPKKHGIDSDFAFEVIAPSIPGYGWSDQPKK 197

Query: 700 PG 705
            G
Sbjct: 198 TG 199


>Z74029-6|CAM84812.1|  457|Caenorhabditis elegans Hypothetical
           protein C45B11.6 protein.
          Length = 457

 Score = 53.6 bits (123), Expect = 2e-07
 Identities = 29/62 (46%), Positives = 40/62 (64%), Gaps = 7/62 (11%)
 Frame = +1

Query: 541 IVPLLILHGWPGSVREFYETIPHLTSVNK-SRDFAV------EVIAPTLPGFGYSDAAVR 699
           +VPLLI HG+PGS  +F++ IP LT+ ++   DF V      EVI P+LPGF +SD   +
Sbjct: 138 VVPLLIFHGFPGSFWDFFKIIPILTNPSRHGFDFGVEEAIQFEVIVPSLPGFIFSDKPTK 197

Query: 700 PG 705
            G
Sbjct: 198 QG 199



 Score = 34.3 bits (75), Expect = 0.099
 Identities = 13/28 (46%), Positives = 20/28 (71%)
 Frame = +2

Query: 425 YPFKEREIFLNKYPQYVTNIQGLDIHFI 508
           + +K+ + FLN + QY T I+GL IHF+
Sbjct: 98  FNWKQHQHFLNTFKQYKTEIEGLKIHFL 125


>AC006776-1|AAF60626.2|  616|Caenorhabditis elegans Hypothetical
           protein Y46H3C.4 protein.
          Length = 616

 Score = 31.1 bits (67), Expect = 0.92
 Identities = 26/94 (27%), Positives = 40/94 (42%), Gaps = 3/94 (3%)
 Frame = -2

Query: 616 LSSVVLFRRIPSQILASREESITELFLDGHKPSVCTNKMYVQSLYVGHILGIFVQEYFPF 437
           +SS+VLF        ++  E+IT+ F D  +      K Y+  +       +  Q  F  
Sbjct: 268 MSSMVLFDAAGCLRTSTSPEAITQEFYDSRQEKYLQRKEYLLEVLQAQSKRLTNQARFIL 327

Query: 436 LK---GILFCPKSKPAI*DIRVKAVLKSDPF*RW 344
            K    I+F  K K AI D  +K    +DP  +W
Sbjct: 328 AKINKEIVFENKKKVAIVDDLIKMGFDADPVKKW 361


>Z73898-8|CAJ90496.1|  431|Caenorhabditis elegans Hypothetical
           protein ZK822.5b protein.
          Length = 431

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 5/65 (7%)
 Frame = +1

Query: 436 GKGNILEQISPICDQHTGIGHTFY*YRQKAYAHQEI-VPLLILHGWPGSVRE----FYET 600
           G  N   ++ P  D H G   T Y  R   Y++  +   L+I+ GW  S+ E      E 
Sbjct: 344 GNSNFTIRMMPTYDAHYGNPDTLYISRISTYSYAGVGFVLMIIIGWIASLFEESDHKVEK 403

Query: 601 IPHLT 615
           I HLT
Sbjct: 404 IRHLT 408


>Z73898-7|CAA98070.1|  577|Caenorhabditis elegans Hypothetical
           protein ZK822.5a protein.
          Length = 577

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 5/65 (7%)
 Frame = +1

Query: 436 GKGNILEQISPICDQHTGIGHTFY*YRQKAYAHQEI-VPLLILHGWPGSVRE----FYET 600
           G  N   ++ P  D H G   T Y  R   Y++  +   L+I+ GW  S+ E      E 
Sbjct: 490 GNSNFTIRMMPTYDAHYGNPDTLYISRISTYSYAGVGFVLMIIIGWIASLFEESDHKVEK 549

Query: 601 IPHLT 615
           I HLT
Sbjct: 550 IRHLT 554


>AF077539-1|AAK84580.2|  550|Caenorhabditis elegans Hypothetical
           protein T25D3.4 protein.
          Length = 550

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = -3

Query: 522 LLSVLIKCMSNPCMLVTYWGYLFKNISLS 436
           +L+VL  CM  PC+ ++ W Y F   SLS
Sbjct: 144 ILTVLCTCMPIPCLKISPWWY-FSLFSLS 171


>AC006607-9|AAF60368.2|  995|Caenorhabditis elegans Hypothetical
           protein C09E7.7 protein.
          Length = 995

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 3/81 (3%)
 Frame = -2

Query: 391 DIRVKAVLKSDPF*RWHGFAMIIKSISEVRYHLIMENNFKGSYAGILWYFVHSGP-HQAL 215
           D  ++A+LKSD   RW+G A   +    + Y++I  ++ K     +   F  + P  ++L
Sbjct: 50  DTVLEAILKSDRRFRWYGTAAEFR--KSLAYYMIFTSSHKKCAVPMYEVFTTTAPIMKSL 107

Query: 214 --GSNLYAGSVF*DARSSIVR 158
             G  LY   +F   R  ++R
Sbjct: 108 KGGQFLYKHDIFSHLRHCLIR 128


>Z81468-2|CAN99666.1|  950|Caenorhabditis elegans Hypothetical
           protein C13B4.1b protein.
          Length = 950

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 11/39 (28%), Positives = 18/39 (46%)
 Frame = -2

Query: 472 ILGIFVQEYFPFLKGILFCPKSKPAI*DIRVKAVLKSDP 356
           + G+F      F+ G+L+C      + D   + V K DP
Sbjct: 477 VSGLFTNRRVQFVDGVLYCSADVAVVGDANDQTVFKYDP 515


>Z81468-1|CAB03875.3| 1010|Caenorhabditis elegans Hypothetical
           protein C13B4.1a protein.
          Length = 1010

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 11/39 (28%), Positives = 18/39 (46%)
 Frame = -2

Query: 472 ILGIFVQEYFPFLKGILFCPKSKPAI*DIRVKAVLKSDP 356
           + G+F      F+ G+L+C      + D   + V K DP
Sbjct: 477 VSGLFTNRRVQFVDGVLYCSADVAVVGDANDQTVFKYDP 515


>Z73098-10|CAA97336.2|  391|Caenorhabditis elegans Hypothetical
           protein T21C9.9 protein.
          Length = 391

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = +2

Query: 356 GIGFEYGFNSNILDGWLRFWAEEYPFKEREIFLNKYPQY 472
           G G+  G+    ++G+  F+ +  PF++       YPQY
Sbjct: 41  GGGYGGGYGGGAINGYATFYRDLTPFRQPYYQTASYPQY 79


>AF125442-2|AAD12792.1|  360|Caenorhabditis elegans Serpentine
           receptor, class v protein19 protein.
          Length = 360

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
 Frame = +3

Query: 42  LYFYSSIFWKYVVVSYFFKEYATF---ETIMGGLFGLVITSCLTIELL 176
           L FY+S  + Y V+ YF  ++  F        G+F  +I  C  I LL
Sbjct: 73  LIFYTSKRFAYAVIPYFVYKHQDFGFAAVAYDGVFWFIIIRCYGITLL 120


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,874,556
Number of Sequences: 27780
Number of extensions: 431750
Number of successful extensions: 1062
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1017
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1059
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1872168044
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)