Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021219
         (776 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g59650.1 68418.m07479 leucine-rich repeat protein kinase, put...    30   1.5  
At4g36530.2 68417.m05187 hydrolase, alpha/beta fold family prote...    29   2.6  
At4g36530.1 68417.m05186 hydrolase, alpha/beta fold family prote...    29   2.6  
At4g12830.1 68417.m02011 hydrolase, alpha/beta fold family prote...    28   6.0  
At3g16330.1 68416.m02063 expressed protein                             28   6.0  
At2g24130.1 68415.m02883 leucine-rich repeat transmembrane prote...    28   7.9  

>At5g59650.1 68418.m07479 leucine-rich repeat protein kinase,
           putative contains leucine rich repeat (LRR) domains,
           Pfam:PF00560; contains protein kinase domain,
           Pfam:PF00069
          Length = 892

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +3

Query: 141 LVITSCLTIELLASQNTEPAYKLDPNAWWGPEC 239
           L++TS  +  ++A +N E AYKL    W G  C
Sbjct: 365 LILTSLSSTSVVAVKNIEAAYKLSRIRWQGDPC 397


>At4g36530.2 68417.m05187 hydrolase, alpha/beta fold family protein
           low similarity to hydrolase [Sphingomonas sp.]
           GI:3426124; contains Pfam profile PF00561: hydrolase,
           alpha/beta fold family
          Length = 378

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 17/50 (34%), Positives = 30/50 (60%)
 Frame = +1

Query: 547 PLLILHGWPGSVREFYETIPHLTSVNKSRDFAVEVIAPTLPGFGYSDAAV 696
           PL+++HG+  SV  +   IP L    K + +A++++     GFG+SD A+
Sbjct: 101 PLVLIHGFGASVFHWRYNIPEL--AKKYKVYALDLL-----GFGWSDKAL 143


>At4g36530.1 68417.m05186 hydrolase, alpha/beta fold family protein
           low similarity to hydrolase [Sphingomonas sp.]
           GI:3426124; contains Pfam profile PF00561: hydrolase,
           alpha/beta fold family
          Length = 321

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 17/50 (34%), Positives = 30/50 (60%)
 Frame = +1

Query: 547 PLLILHGWPGSVREFYETIPHLTSVNKSRDFAVEVIAPTLPGFGYSDAAV 696
           PL+++HG+  SV  +   IP L    K + +A++++     GFG+SD A+
Sbjct: 44  PLVLIHGFGASVFHWRYNIPEL--AKKYKVYALDLL-----GFGWSDKAL 86


>At4g12830.1 68417.m02011 hydrolase, alpha/beta fold family protein
           low similarity to haloalkane dehalogenase from
           [Mycobacterium avium subsp. avium] GI:14422311,
           [Pseudomonas pavonaceae] GI:6689030; contains Pfam
           profile PF00561: hydrolase, alpha/beta fold family
          Length = 393

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 16/47 (34%), Positives = 27/47 (57%)
 Frame = +1

Query: 547 PLLILHGWPGSVREFYETIPHLTSVNKSRDFAVEVIAPTLPGFGYSD 687
           P++++HG+P     + +TIP L     S+++    IA    GFG+SD
Sbjct: 135 PVILIHGFPSQAYSYRKTIPVL-----SKNY--RAIAFDWLGFGFSD 174


>At3g16330.1 68416.m02063 expressed protein
          Length = 205

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = +1

Query: 640 AVEVIAPTLPGFGYSDAAVRP 702
           A+  ++P LPGFG S ++VRP
Sbjct: 137 ALTALSPYLPGFGRSTSSVRP 157


>At2g24130.1 68415.m02883 leucine-rich repeat transmembrane protein
           kinase, putative 
          Length = 980

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 16/43 (37%), Positives = 22/43 (51%)
 Frame = +3

Query: 477 PTYRDWTYILLVQTEGLCPSRNSSVIDSSRLARICEGILRNNT 605
           P Y   +Y  L+   G      SS+I S R   + +G+LRNNT
Sbjct: 644 PKYPRISYQQLIAATG--GFNASSLIGSGRFGHVYKGVLRNNT 684


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,741,050
Number of Sequences: 28952
Number of extensions: 402100
Number of successful extensions: 1032
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 998
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1032
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1736283200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)