Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021217
         (696 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI0000DB7391 Cluster: PREDICTED: hypothetical protein;...    42   0.019
UniRef50_UPI00015534B2 Cluster: PREDICTED: hypothetical protein;...    33   5.1  
UniRef50_UPI0000E80A81 Cluster: PREDICTED: hypothetical protein;...    33   6.7  
UniRef50_Q6N765 Cluster: 5-methyltetrahydropteroyltriglutamate--...    33   6.7  
UniRef50_A0P0D1 Cluster: Putative uncharacterized protein; n=1; ...    33   8.8  

>UniRef50_UPI0000DB7391 Cluster: PREDICTED: hypothetical protein;
           n=1; Apis mellifera|Rep: PREDICTED: hypothetical protein
           - Apis mellifera
          Length = 178

 Score = 41.5 bits (93), Expect = 0.019
 Identities = 26/108 (24%), Positives = 44/108 (40%), Gaps = 1/108 (0%)
 Frame = +1

Query: 376 NRSALQCLAYTCSRHWTEVPAPPCPR*PWASVTDKSTA-VRLGRFDVHAKSGKWDILESL 552
           N S L CL + C  HW             +   D S    +    +V A + +WD ++ L
Sbjct: 15  NSSVLNCLKHACKGHWNLSENTLMSPTILSQQHDVSPRQYQKVALEVRASAAEWDDVDRL 74

Query: 553 FTKKDWLGRSTVSSHVPAQCLLRRLSELGGQSRLMAACLAKLPNADER 696
              K WLG   +  ++P + +L+ L      S ++   L  + N + R
Sbjct: 75  LLTKGWLGSKKLQIYLPIEDVLKILHNNNAPSEVLEKYLKYVDNIERR 122


>UniRef50_UPI00015534B2 Cluster: PREDICTED: hypothetical protein;
           n=2; Mus musculus|Rep: PREDICTED: hypothetical protein -
           Mus musculus
          Length = 362

 Score = 33.5 bits (73), Expect = 5.1
 Identities = 15/43 (34%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
 Frame = +3

Query: 192 WRTSSTPL-RRKATTWTACCGRDQYPGEPLQPARRGRAPNQNG 317
           WR    P   R    W +C G    P  P  P R+GR+ +Q G
Sbjct: 255 WRRGLVPFFPRSLVPWRSCSGTQAAPRSPSSPPRQGRSDDQLG 297


>UniRef50_UPI0000E80A81 Cluster: PREDICTED: hypothetical protein;
           n=1; Gallus gallus|Rep: PREDICTED: hypothetical protein
           - Gallus gallus
          Length = 400

 Score = 33.1 bits (72), Expect = 6.7
 Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 5/46 (10%)
 Frame = +3

Query: 195 RTSSTPLRRKATTWTACCGRD-----QYPGEPLQPARRGRAPNQNG 317
           R    P RR+A TW +C GR+       P  P+   RRG  P + G
Sbjct: 269 RARLPPRRRRAHTWHSCAGREAAPQCACPRRPIAAPRRGPVPRRPG 314


>UniRef50_Q6N765 Cluster:
           5-methyltetrahydropteroyltriglutamate--homocysteine
           methyltransferase; n=10; Proteobacteria|Rep:
           5-methyltetrahydropteroyltriglutamate--homocysteine
           methyltransferase - Rhodopseudomonas palustris
          Length = 788

 Score = 33.1 bits (72), Expect = 6.7
 Identities = 26/90 (28%), Positives = 37/90 (41%), Gaps = 4/90 (4%)
 Frame = +2

Query: 308 PKWLMLTLNYLNGRN-WRTCRS*ATGRRYSVWRTRARDT---GPKCRRRHVPADLGPASQ 475
           PK L+L+L  ++GRN WR        R   + + R  +     P C   HVP DL   + 
Sbjct: 307 PKDLVLSLGVVDGRNIWRADLPDLLDRVEPIVQQRGAERVQLAPSCSLLHVPVDLELETG 366

Query: 476 ISPLQFDWVVLTFTLNPESGTSSNRCSRKR 565
           + P    W+  +     E  T S   S  R
Sbjct: 367 LDPDLKSWLSFSLQKMGELSTLSRALSGDR 396


>UniRef50_A0P0D1 Cluster: Putative uncharacterized protein; n=1;
           Stappia aggregata IAM 12614|Rep: Putative
           uncharacterized protein - Stappia aggregata IAM 12614
          Length = 105

 Score = 32.7 bits (71), Expect = 8.8
 Identities = 16/48 (33%), Positives = 24/48 (50%)
 Frame = +1

Query: 301 HQTKMVDAYVKLLEWQKLANLPELSNRSALQCLAYTCSRHWTEVPAPP 444
           H+T    AY+  L + +  +LP+L + S  +    T SR W   P PP
Sbjct: 51  HETVHCGAYLLALTYDEHLSLPDLVDESIGEAAISTVSRAWKVEPPPP 98


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 732,570,785
Number of Sequences: 1657284
Number of extensions: 15999895
Number of successful extensions: 46344
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 44378
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 46329
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 54958682807
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)