Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021217
         (696 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF017415-2|AAB70263.1|  284|Tribolium castaneum abdominal-A prot...    26   0.34 
AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII pr...    26   0.34 
AF017414-2|AAB70261.1|  150|Tribolium castaneum abdominal-A prot...    26   0.34 
AF017414-1|AAB70260.1|  209|Tribolium castaneum abdominal-AII pr...    26   0.34 
AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxida...    25   0.45 
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    24   1.0  
EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    24   1.4  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          23   1.8  
DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.        23   2.4  
U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    23   3.2  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      22   5.5  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      22   5.5  
AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory recept...    22   5.5  
AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    22   5.5  
AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    21   9.6  

>AF017415-2|AAB70263.1|  284|Tribolium castaneum abdominal-A
           protein.
          Length = 284

 Score = 25.8 bits (54), Expect = 0.34
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +1

Query: 433 PAPPCPR*PWASVTD 477
           P P  PR PW S+TD
Sbjct: 126 PIPDIPRYPWMSITD 140


>AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII
           protein.
          Length = 343

 Score = 25.8 bits (54), Expect = 0.34
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +1

Query: 433 PAPPCPR*PWASVTD 477
           P P  PR PW S+TD
Sbjct: 185 PIPDIPRYPWMSITD 199


>AF017414-2|AAB70261.1|  150|Tribolium castaneum abdominal-A
           protein.
          Length = 150

 Score = 25.8 bits (54), Expect = 0.34
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +1

Query: 433 PAPPCPR*PWASVTD 477
           P P  PR PW S+TD
Sbjct: 126 PIPDIPRYPWMSITD 140


>AF017414-1|AAB70260.1|  209|Tribolium castaneum abdominal-AII
           protein.
          Length = 209

 Score = 25.8 bits (54), Expect = 0.34
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +1

Query: 433 PAPPCPR*PWASVTD 477
           P P  PR PW S+TD
Sbjct: 185 PIPDIPRYPWMSITD 199


>AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxidase
           subunit 2 protein.
          Length = 683

 Score = 25.4 bits (53), Expect = 0.45
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -1

Query: 570 PVLFREQRFEDVPLSGFSVNVKTTQS 493
           P LFR+Q+   + L  F+VN+K  Q+
Sbjct: 514 PWLFRDQKIMFIELDKFTVNLKQGQN 539


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +2

Query: 266  WRTTSTSPAWTRT 304
            W +T+TSP WT T
Sbjct: 1043 WSSTTTSPWWTTT 1055


>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +3

Query: 213 LRRKATTWTACCGRDQYPGEPLQPARRGRAPNQNG*CL 326
           L RKA  W A  GR +   + L P++ G +P     CL
Sbjct: 239 LERKA--WVASFGRPKMTPQSLLPSQTGLSPYLRFGCL 274


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 9/25 (36%), Positives = 11/25 (44%)
 Frame = +2

Query: 287 PAWTRTKPKWLMLTLNYLNGRNWRT 361
           P W +T   WL    NY    +W T
Sbjct: 654 PRWRQTLAMWLNHNPNYAEVTDWYT 678


>DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.
          Length = 414

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = -2

Query: 635 SSLSRLSRHCAGTCDDTVLRPSQSFFVNSDSRMSHF 528
           S++SRL R   G CD+  ++    F V + +    F
Sbjct: 155 SAISRLLRGKGGECDEITIQAILEFSVTNPTIKEDF 190


>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 10/37 (27%), Positives = 18/37 (48%)
 Frame = +3

Query: 360 PAGVEQQVGVTVSGVHVLATLDRSAGAAMSPLTLGQR 470
           P  +   V  T+  +  L  + R A    SP+T+G++
Sbjct: 314 PFALRPAVDATIQEMLDLGVIKREASPYASPMTVGKK 350


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = -1

Query: 462 PRSAGTWRRRHFGP 421
           PR   TWRR   GP
Sbjct: 592 PREQLTWRRNFHGP 605


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = -1

Query: 462 PRSAGTWRRRHFGP 421
           PR   TWRR   GP
Sbjct: 484 PREQLTWRRNFHGP 497


>AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory receptor
           candidate 43 protein.
          Length = 353

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -1

Query: 330 NVSINHFGLVRVHAGLVEVVRQDIGPFRS 244
           N+S NH  LVR    L +++ Q +  + S
Sbjct: 188 NMSRNHLFLVRRTETLAQILNQTVNFYNS 216


>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +2

Query: 413 RDTGPKCRRRHVPADL 460
           R  GP   RRH+PA L
Sbjct: 330 RGPGPARSRRHLPAHL 345


>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 6/13 (46%), Positives = 8/13 (61%)
 Frame = -2

Query: 644 WPPSSLSRLSRHC 606
           WPP ++  L R C
Sbjct: 2   WPPEAVHSLERFC 14


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,326
Number of Sequences: 336
Number of extensions: 3784
Number of successful extensions: 16
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18322480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)