Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021217
         (696 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1805.03c |trm13||tRNA 2'-O-methyltransferase Trm13 |Schizosa...    30   0.28 
SPAC4F8.07c |hxk2||hexokinase 2 |Schizosaccharomyces pombe|chr 1...    26   4.5  
SPAC3C7.05c |mug191||alpha-1,6-mannanase |Schizosaccharomyces po...    26   4.5  
SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3 |Schizosacc...    26   5.9  
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi...    26   5.9  
SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10 |Schizos...    25   7.8  
SPBC577.14c |spa1|spa|ornithine decarboxylase antizyme Spa1|Schi...    25   7.8  

>SPAC1805.03c |trm13||tRNA 2'-O-methyltransferase Trm13
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 407

 Score = 30.3 bits (65), Expect = 0.28
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = +3

Query: 144 PGRLTLKLRHCHTLCRWRTSSTPLRRKATTW 236
           P  L + L  CH  CRWRT ST  R + + W
Sbjct: 284 PNALVIALC-CHHHCRWRTLSTFAREQLSHW 313


>SPAC4F8.07c |hxk2||hexokinase 2 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 455

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +1

Query: 298 AHQTKMVDAYVKLLEWQKLANLPELSNRSALQCL 399
           A+Q  + ++Y  LL W K  N+PE  N+   Q L
Sbjct: 147 ANQVSITESY--LLRWTKGLNIPEAINKDFAQFL 178


>SPAC3C7.05c |mug191||alpha-1,6-mannanase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 442

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +2

Query: 248 RKGPISWRTTSTSPAWT 298
           ++G I+W T +T P WT
Sbjct: 148 QRGGIAWHTRTTGPPWT 164


>SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 732

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -2

Query: 596 CDDTVLRPSQSFFVNSDSRMSHF 528
           CD    RP+  +F N DS   HF
Sbjct: 274 CDQVAGRPTHQYFKNYDSLERHF 296


>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
           Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 690

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -2

Query: 449 GHGGAGTSVQCREHVYARHC 390
           GHG  G  +QC +    RHC
Sbjct: 369 GHGTFGKVIQCYDQSTGRHC 388


>SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1649

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 11/43 (25%), Positives = 21/43 (48%)
 Frame = -2

Query: 596 CDDTVLRPSQSFFVNSDSRMSHFPDLA*TSKRPSRTAVDLSVT 468
           C D +L  S    ++     S+ P+   T K+P   + +++VT
Sbjct: 577 CSDLLLDRSSEIGLDGTYLFSYIPERLFTEKKPKNASKEIAVT 619


>SPBC577.14c |spa1|spa|ornithine decarboxylase antizyme
           Spa1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 226

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 15/50 (30%), Positives = 25/50 (50%)
 Frame = +2

Query: 401 RTRARDTGPKCRRRHVPADLGPASQISPLQFDWVVLTFTLNPESGTSSNR 550
           R+R R    + RRRHVP  +  + +    +   ++   T+N E G S +R
Sbjct: 72  RSRPRAAFKQQRRRHVPRWISDSFRTCLPKPSGILKEQTVNEEEGNSRHR 121


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,891,116
Number of Sequences: 5004
Number of extensions: 60736
Number of successful extensions: 149
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)