Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021217
(696 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_01_0204 + 2199778-2200835,2201212-2201311 30 2.0
02_02_0006 - 6037539-6038570 29 3.5
06_01_1070 + 8750260-8750335,8750432-8751311,8753719-8754646 29 4.7
05_01_0469 - 3725117-3725170,3725282-3725356,3726938-3727015,372... 29 4.7
03_05_0529 - 25297909-25298276,25300143-25300413,25300944-253010... 29 4.7
01_01_0328 - 2664412-2664535,2665388-2665465,2667784-2667895,266... 28 6.2
11_06_0648 + 25873779-25874279,25874418-25875548 28 8.1
07_01_0327 + 2289472-2289978,2290016-2290444,2290688-2290750,229... 28 8.1
02_05_1080 - 33955034-33955117,33955199-33955300,33955381-339555... 28 8.1
>10_01_0204 + 2199778-2200835,2201212-2201311
Length = 385
Score = 29.9 bits (64), Expect = 2.0
Identities = 16/40 (40%), Positives = 20/40 (50%)
Frame = -1
Query: 474 CDAGPRSAGTWRRRHFGPVSRARVRQTL*RRPVAQLRQVR 355
C PR AG WR R + R + R + RR VAQ + R
Sbjct: 86 CPMSPRRAGAWRAR----MRRRKARPEMRRRNVAQAAEAR 121
>02_02_0006 - 6037539-6038570
Length = 343
Score = 29.1 bits (62), Expect = 3.5
Identities = 15/31 (48%), Positives = 18/31 (58%)
Frame = -3
Query: 163 LSVSRPGQKTILPSFYFGISL*SSTTTRKYL 71
LSV R G LP+F FG S+ +TT YL
Sbjct: 125 LSVRRSGAYASLPAFLFGESMGGATTLLAYL 155
>06_01_1070 + 8750260-8750335,8750432-8751311,8753719-8754646
Length = 627
Score = 28.7 bits (61), Expect = 4.7
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Frame = -3
Query: 286 AG*SGSPGYWSLPQQAVHVVALRLNGV--LEVRHLQSV*QWRSLSVS 152
AG S YW +PQ A+H +A N V LE + QS RS++ +
Sbjct: 485 AGTSPLSAYWLVPQYALHGMAEAFNSVGHLEFMYDQSPESMRSMATA 531
>05_01_0469 -
3725117-3725170,3725282-3725356,3726938-3727015,
3727091-3727183,3727582-3727696,3728028-3728158,
3728243-3728512,3728983-3729120
Length = 317
Score = 28.7 bits (61), Expect = 4.7
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = -2
Query: 506 KRPSRTAVDLSVTLAQGQRGHGGAGTSVQCREHV 405
++ SR V LSV L+ G G+G T+ C E V
Sbjct: 282 RKRSRRTVSLSVELSDGMEGYGTTRTANCCEEIV 315
>03_05_0529 -
25297909-25298276,25300143-25300413,25300944-25301019,
25302221-25302311,25304134-25304206
Length = 292
Score = 28.7 bits (61), Expect = 4.7
Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 7/73 (9%)
Frame = -2
Query: 473 VTLAQGQRGHGGAGTSVQCREHVYA------RHCNADLLLNSGRFASFCHSSN-LT*AST 315
VT R +GG G++ +C+ +V + + + L++ S + +C SN ST
Sbjct: 8 VTATTATRQYGGGGSAAECKIYVASFMRGRVKKNSIQLIVRSASYVRWCRFSNPRVLIST 67
Query: 314 ILVWCASTPGWLK 276
LV AS P +K
Sbjct: 68 TLVVPASDPTVIK 80
>01_01_0328 -
2664412-2664535,2665388-2665465,2667784-2667895,
2668344-2668410,2668473-2668562,2668672-2668787,
2668999-2671924
Length = 1170
Score = 28.3 bits (60), Expect = 6.2
Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = +1
Query: 337 LEWQKLANLPE-LSNRSALQCLAYTCSRHWTEVPA 438
L + K+ LPE + N ++L+ L+ C RH +PA
Sbjct: 586 LSYTKIKKLPESIGNLTSLEYLSLHCCRHLDSLPA 620
>11_06_0648 + 25873779-25874279,25874418-25875548
Length = 543
Score = 27.9 bits (59), Expect = 8.1
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = -1
Query: 324 SINHFGLVRVHAGLVEVVRQDIGPFRSKPSTLL 226
SI+H +VRV V+ RQ + PFR K +L
Sbjct: 245 SISHQHIVRVFGSCVKEKRQLLPPFRKKEEEIL 277
>07_01_0327 +
2289472-2289978,2290016-2290444,2290688-2290750,
2290845-2291126
Length = 426
Score = 27.9 bits (59), Expect = 8.1
Identities = 21/58 (36%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Frame = +1
Query: 481 STAVRLGRF-DVHAKSGKWDILESLFTKKDWLGRSTVSSHVPAQCLLRRLSELGGQSR 651
S A RL F DV A SG +L ++ + GR S+ LLRR+ G SR
Sbjct: 85 SKAARLADFFDVAAGSGAGGVLAAMLFARGPCGRPMYSADDALGFLLRRVRRRGWSSR 142
>02_05_1080 -
33955034-33955117,33955199-33955300,33955381-33955510,
33955674-33955783,33955827-33955950,33956042-33956136,
33956205-33956300,33956419-33956551,33956668-33956759,
33956844-33956948,33957201-33957335,33957421-33957526,
33957621-33957748,33957860-33957958,33958049-33958228,
33958303-33958446,33958533-33958647,33958739-33958905
Length = 714
Score = 27.9 bits (59), Expect = 8.1
Identities = 15/31 (48%), Positives = 16/31 (51%), Gaps = 3/31 (9%)
Frame = +1
Query: 415 RHWTEVPAP---PCPR*PWASVTDKSTAVRL 498
R VP P PCP PW +V DKS V L
Sbjct: 195 RSCDHVPQPGEEPCPLDPWIAVPDKSKYVDL 225
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,428,481
Number of Sequences: 37544
Number of extensions: 470359
Number of successful extensions: 1695
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1640
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1695
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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