Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021217
         (696 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35108| Best HMM Match : AT_hook (HMM E-Value=0.15)                  31   0.89 
SB_43690| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.1  
SB_57716| Best HMM Match : Phage_fiber_2 (HMM E-Value=4.3)             29   3.6  
SB_36803| Best HMM Match : RhoGAP (HMM E-Value=0)                      29   4.8  
SB_52835| Best HMM Match : vATP-synt_E (HMM E-Value=2.1e-05)           28   6.3  
SB_9576| Best HMM Match : F5_F8_type_C (HMM E-Value=0.0016)            28   8.3  
SB_38032| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.3  

>SB_35108| Best HMM Match : AT_hook (HMM E-Value=0.15)
          Length = 1600

 Score = 31.1 bits (67), Expect = 0.89
 Identities = 21/64 (32%), Positives = 29/64 (45%)
 Frame = +1

Query: 442  PCPR*PWASVTDKSTAVRLGRFDVHAKSGKWDILESLFTKKDWLGRSTVSSHVPAQCLLR 621
            PCPR PW +    S    L + ++H    K     S  TK   + + TV +H  A+   R
Sbjct: 1141 PCPRPPWRARPQTSITPLLTKLEIHVAEDK-----SFTTKVRDIFKETVVTHKSAKESRR 1195

Query: 622  RLSE 633
             LSE
Sbjct: 1196 WLSE 1199


>SB_43690| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 780

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +1

Query: 349 KLANLPELSNRSALQCLAYTCSRHW 423
           KL ++P L N S+L C   TC+  W
Sbjct: 170 KLLSIPSLKNFSSLHCKLKTCTEQW 194


>SB_57716| Best HMM Match : Phage_fiber_2 (HMM E-Value=4.3)
          Length = 189

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +1

Query: 442 PCPR*PWASVTDKSTAVRLGRFDVHAKSGK 531
           P P  P  +  DK+ A +L R  VH+ SGK
Sbjct: 74  PAPDRPGQTAEDKAKATKLSRRSVHSTSGK 103


>SB_36803| Best HMM Match : RhoGAP (HMM E-Value=0)
          Length = 1277

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 10/41 (24%), Positives = 20/41 (48%)
 Frame = -2

Query: 164  LECQPPGAEDNFAVLLFRYFTLIINHYT*VLICTKITVLKR 42
            ++C PP   D+  +L  + +   + HYT + +C     + R
Sbjct: 1093 MQCAPPNLNDSRDLLDLKLYLKTVEHYTSIRLCFLFIAMSR 1133


>SB_52835| Best HMM Match : vATP-synt_E (HMM E-Value=2.1e-05)
          Length = 288

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = +1

Query: 499 GRFDVHAKSGKWDILESLFTKKDWLGRSTVS 591
           G  ++HAK GK  ++ +L ++ + LGR  +S
Sbjct: 234 GGIELHAKQGKIKVVNTLESRLEMLGRQDIS 264


>SB_9576| Best HMM Match : F5_F8_type_C (HMM E-Value=0.0016)
          Length = 491

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = +2

Query: 524 PESGTSSNRCSRKRTGWV 577
           PES    NRCS K TGW+
Sbjct: 342 PESCIPINRCSTKATGWM 359


>SB_38032| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 139

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = +1

Query: 538 ILESLFTKKDW-LGRSTVSSHVPAQCLLRRLSEL 636
           +L  + TKK+W  G    + H+P   + RRLSEL
Sbjct: 52  LLLDIRTKKEWDTGHIANAKHIPVADIDRRLSEL 85


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,183,563
Number of Sequences: 59808
Number of extensions: 519851
Number of successful extensions: 1467
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1304
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1467
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1817559367
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)