Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021217
         (696 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY928072-1|AAX78396.1| 1319|Drosophila melanogaster hyperpolariz...    29   4.6  
AY928069-1|AAX78393.1| 1282|Drosophila melanogaster hyperpolariz...    29   4.6  
AE013599-1867|ABC66058.1| 1290|Drosophila melanogaster CG8585-PB...    29   4.6  
AE013599-1866|ABC66057.1| 1327|Drosophila melanogaster CG8585-PE...    29   4.6  

>AY928072-1|AAX78396.1| 1319|Drosophila melanogaster
           hyperpolarization-activated ionchannel variant
           DMIH-A1B2C2 protein.
          Length = 1319

 Score = 29.5 bits (63), Expect = 4.6
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = +1

Query: 589 SSHVPAQCLLRRLSELGGQSRLMAAC 666
           SSH P  C  + +S  GGQS L  AC
Sbjct: 135 SSHSPVSCGTQSVSSTGGQSALYDAC 160


>AY928069-1|AAX78393.1| 1282|Drosophila melanogaster
           hyperpolarization-activated ionchannel variant
           DMIH-A1B1C1 protein.
          Length = 1282

 Score = 29.5 bits (63), Expect = 4.6
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = +1

Query: 589 SSHVPAQCLLRRLSELGGQSRLMAAC 666
           SSH P  C  + +S  GGQS L  AC
Sbjct: 135 SSHSPVSCGTQSVSSTGGQSALYDAC 160


>AE013599-1867|ABC66058.1| 1290|Drosophila melanogaster CG8585-PB,
           isoform B protein.
          Length = 1290

 Score = 29.5 bits (63), Expect = 4.6
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = +1

Query: 589 SSHVPAQCLLRRLSELGGQSRLMAAC 666
           SSH P  C  + +S  GGQS L  AC
Sbjct: 135 SSHSPVSCGTQSVSSTGGQSALYDAC 160


>AE013599-1866|ABC66057.1| 1327|Drosophila melanogaster CG8585-PE,
           isoform E protein.
          Length = 1327

 Score = 29.5 bits (63), Expect = 4.6
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = +1

Query: 589 SSHVPAQCLLRRLSELGGQSRLMAAC 666
           SSH P  C  + +S  GGQS L  AC
Sbjct: 135 SSHSPVSCGTQSVSSTGGQSALYDAC 160


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 33,285,086
Number of Sequences: 53049
Number of extensions: 749278
Number of successful extensions: 2009
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1922
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2009
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3046624548
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)