Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021217
         (696 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U29488-12|AAA68769.3|  617|Caenorhabditis elegans Hypothetical p...    29   2.4  
AL022716-5|CAB97232.1|  291|Caenorhabditis elegans Hypothetical ...    29   3.2  
Z68215-7|CAA92453.1|  289|Caenorhabditis elegans Hypothetical pr...    28   5.5  
Z78540-4|CAB01734.2|  624|Caenorhabditis elegans Hypothetical pr...    28   7.3  
Z81568-9|CAB04599.2|  386|Caenorhabditis elegans Hypothetical pr...    27   9.7  
AF016437-1|AAB65884.2|  690|Caenorhabditis elegans Hypothetical ...    27   9.7  

>U29488-12|AAA68769.3|  617|Caenorhabditis elegans Hypothetical
           protein C56C10.1 protein.
          Length = 617

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = +2

Query: 431 CRRRHVPADLGPASQISPLQFDWVVLTFTLNPESGTSSNRCSRKRT 568
           C +   P DL    Q  PL FDW+     +NPE    +++ +R  T
Sbjct: 250 CGKLAFPVDLRKQVQTGPLDFDWI----EINPEEDKEAHQQNRGDT 291


>AL022716-5|CAB97232.1|  291|Caenorhabditis elegans Hypothetical
           protein C24F3.6 protein.
          Length = 291

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = +3

Query: 249 GRDQYPGEPLQPARRGRAPNQNG*C 323
           GRD  PG P QP + GR P + G C
Sbjct: 250 GRDGQPGHPGQPGKDGR-PGEKGVC 273


>Z68215-7|CAA92453.1|  289|Caenorhabditis elegans Hypothetical
           protein C53B4.5 protein.
          Length = 289

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 13/25 (52%), Positives = 14/25 (56%)
 Frame = +3

Query: 249 GRDQYPGEPLQPARRGRAPNQNG*C 323
           GRD  PG P QP R G  P + G C
Sbjct: 248 GRDGQPGRPGQPGRDGH-PGEKGVC 271


>Z78540-4|CAB01734.2|  624|Caenorhabditis elegans Hypothetical
           protein C33G3.6 protein.
          Length = 624

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 13/42 (30%), Positives = 19/42 (45%)
 Frame = -2

Query: 458 GQRGHGGAGTSVQCREHVYARHCNADLLLNSGRFASFCHSSN 333
           G+ G   AG   +CR        N + L N+G  A+ C+  N
Sbjct: 26  GEMGRDKAGVDEECRHEEDKDESNTENLKNTGENATACNGIN 67


>Z81568-9|CAB04599.2|  386|Caenorhabditis elegans Hypothetical
           protein K08E3.7 protein.
          Length = 386

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 4/63 (6%)
 Frame = +3

Query: 54  CDFCANKYLRVVVDDQSEIPK*KDGKIVFCP----GRLTLKLRHCHTLCRWRTSSTPLRR 221
           C FC   YL   ++    + +   G  +FCP     R+   + H H +   +TS +  +R
Sbjct: 211 CQFCFRDYLLSQLERFGFVNQPPHGFTIFCPYPGCNRVVQDVHHFHIM--GQTSYSEYQR 268

Query: 222 KAT 230
           KAT
Sbjct: 269 KAT 271


>AF016437-1|AAB65884.2|  690|Caenorhabditis elegans Hypothetical
           protein F13H6.1 protein.
          Length = 690

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 5/47 (10%)
 Frame = -1

Query: 531 LSGFSVNVKTTQSNCSGLI-----CDAGPRSAGTWRRRHFGPVSRAR 406
           LS FS  ++   SNC G +     C+  PR+    RRR F P +  R
Sbjct: 117 LSCFSNFIEHKVSNCGGKLTPSDDCEVTPRNFDRSRRRTFNPAALIR 163


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,637,275
Number of Sequences: 27780
Number of extensions: 365315
Number of successful extensions: 962
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 921
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 962
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)