Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021217
         (696 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     24   1.6  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    24   1.6  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    24   1.6  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    23   2.8  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    22   6.4  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    22   6.4  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   8.5  

>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +3

Query: 213 LRRKATTWTACCGRDQYPGEPLQPARRGRAPNQNG*CL 326
           L RKA  W A  GR +   + L P++ G +P     CL
Sbjct: 243 LERKA--WVASFGRPKMTPQSLLPSQTGLSPYLRFGCL 278


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = -1

Query: 609 LRRHVRRHRAPTQPVLFREQRFEDVPLSG 523
           LRR     R    P +  + RF D PLSG
Sbjct: 213 LRRGFDGFRVDALPYICEDMRFLDEPLSG 241


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = -1

Query: 609 LRRHVRRHRAPTQPVLFREQRFEDVPLSG 523
           LRR     R    P +  + RF D PLSG
Sbjct: 213 LRRGFDGFRVDALPYICEDMRFLDEPLSG 241


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +2

Query: 257 PISWRTTSTSPAWTRTKPKWLMLTLNY 337
           P  W   STS  +++T   WL +  NY
Sbjct: 425 PYQW-DNSTSAGFSQTNKTWLPVNENY 450


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -3

Query: 148 PGQKTILPSFYFGISL 101
           P +KT L S Y+G+S+
Sbjct: 268 PTEKTPLISLYYGVSI 283


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 11/35 (31%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
 Frame = +1

Query: 277 FNQ--PGVDAHQTKMVDAYVKLLEWQKLANLPELS 375
           FNQ    +D  +T+  D+   +  W+  A +PEL+
Sbjct: 322 FNQLISSLDEIRTRYKDSSSSVEGWENRATIPELN 356


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = +2

Query: 140 LPRAADTQATPLSYTL*MAH 199
           +PR+ D + +P +YT  ++H
Sbjct: 931 IPRSDDIRLSPAAYTANVSH 950


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 204,463
Number of Sequences: 438
Number of extensions: 4306
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21317625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)