Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021217
         (696 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g42940.1 68418.m05235 zinc finger (C3HC4-type RING finger) fa...    31   0.96 
At1g65760.1 68414.m07463 F-box family protein contains F-box dom...    29   2.2  
At2g17690.1 68415.m02048 F-box family protein contains F-box dom...    29   2.9  
At3g48560.1 68416.m05302 acetolactate synthase, chloroplast / ac...    28   6.8  
At2g29210.1 68415.m03550 splicing factor PWI domain-containing p...    28   6.8  
At5g26960.1 68418.m03217 kelch repeat-containing F-box family pr...    27   9.0  
At4g35040.1 68417.m04972 bZIP transcription factor family protei...    27   9.0  

>At5g42940.1 68418.m05235 zinc finger (C3HC4-type RING finger)
           family protein similar to Pfam domain, PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 691

 Score = 30.7 bits (66), Expect = 0.96
 Identities = 18/42 (42%), Positives = 22/42 (52%)
 Frame = -2

Query: 677 SLARQAAMRRDWPPSSLSRLSRHCAGTCDDTVLRPSQSFFVN 552
           + A    +RR  PPS L+ LSRH         LRP QSF V+
Sbjct: 280 TFAAGTVVRRPVPPSQLN-LSRHLPADQHSLDLRPGQSFVVS 320


>At1g65760.1 68414.m07463 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 362

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 17/48 (35%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
 Frame = -3

Query: 259 WS-LPQQAVHVVALRLNGVLEVRHLQSV*Q-WRSLSVSRPGQKTILPS 122
           WS LP++ +H++ L L  V+E++  +S+ + WRS S S   +    PS
Sbjct: 6   WSNLPEELLHMIVLLLFSVVELKRFRSICRSWRS-STSGVNRNNPFPS 52


>At2g17690.1 68415.m02048 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 421

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 15/36 (41%), Positives = 25/36 (69%), Gaps = 2/36 (5%)
 Frame = -3

Query: 265 GYWS-LPQQAVHVVALRLNGVLEVRHLQSV*Q-WRS 164
           G WS LP++ + ++ALRL  V+E+   +S+ + WRS
Sbjct: 2   GDWSKLPEELLGLIALRLYSVIELIRFRSICKSWRS 37


>At3g48560.1 68416.m05302 acetolactate synthase, chloroplast /
           acetohydroxy-acid synthase (ALS) nearly identical to
           SP|P17597 Acetolactate synthase, chloroplast precursor
           (EC 2.2.1.6, formerly EC 4.1.3.18) (Acetohydroxy-acid
           synthase) (ALS) {Arabidopsis thaliana}
          Length = 670

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +2

Query: 464 PASQISPLQFDWVVLTFTLNPESGTSSNR 550
           P+S  SPL      L F+LNP   +SS+R
Sbjct: 22  PSSSKSPLPISRFSLPFSLNPNKSSSSSR 50


>At2g29210.1 68415.m03550 splicing factor PWI domain-containing
           protein contains Pfam profile PF01480: PWI domain
          Length = 878

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 22/62 (35%), Positives = 27/62 (43%), Gaps = 4/62 (6%)
 Frame = -3

Query: 295 PRRAG*SGSPGYWSLPQQAVHVVAL----RLNGVLEVRHLQSV*QWRSLSVSRPGQKTIL 128
           PRRAG    P    LP        L    R+ G     HL+S       S+S PG+K +L
Sbjct: 465 PRRAGLPSPPPAQRLPSPPPRRAGLPSPMRIGGSHAANHLESP---SPSSLSPPGRKKVL 521

Query: 127 PS 122
           PS
Sbjct: 522 PS 523


>At5g26960.1 68418.m03217 kelch repeat-containing F-box family
           protein predicted proteins, Arabidopsis thaliana and
           Oryza sativa; contains Pfam profiles PF01344: Kelch
           motif, PF00646: F-box domain
          Length = 413

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +1

Query: 340 EWQKLANLPELSNRSALQCLAY 405
           EW++ A+LPE+  R+A  C+ +
Sbjct: 392 EWRRAADLPEMITRAACACVEW 413


>At4g35040.1 68417.m04972 bZIP transcription factor family protein
           contains Pfam profile: PF00170 bZIP transcription factor
          Length = 261

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 18/49 (36%), Positives = 20/49 (40%)
 Frame = -2

Query: 680 GSLARQAAMRRDWPPSSLSRLSRHCAGTCDDTVLRPSQSFFVNSDSRMS 534
           GS   Q  M  + P  S S +   C   CDD V  P   F VNS    S
Sbjct: 164 GSFPYQKPMAANIP--SFSHMMNPCNVQCDDEVYCPQNVFGVNSQEGAS 210


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,572,274
Number of Sequences: 28952
Number of extensions: 338161
Number of successful extensions: 905
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 880
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 905
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1487069504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)