Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021216
         (688 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659252-1|ABG47450.1|  377|Tribolium castaneum chitinase 13 pro...    25   0.58 
AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    23   2.3  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    23   2.3  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    23   2.3  

>DQ659252-1|ABG47450.1|  377|Tribolium castaneum chitinase 13
           protein.
          Length = 377

 Score = 25.0 bits (52), Expect = 0.58
 Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
 Frame = +1

Query: 547 WVVKFNSL--NELVDYHRTASVSRLQDVKLRDVVPEKCW 657
           + V   SL  NE+ ++HR  +V  L D+K+  +  +  W
Sbjct: 285 YTVNLGSLGYNEICEFHRNGTVVFLDDMKVPYMYEDTFW 323


>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = -3

Query: 359 FSFVCNY*E*ALLSRLIQLCTSSYRPPC 276
           F+F  N     LLS LI +C   YR  C
Sbjct: 162 FAFPINLSVPVLLSGLIAMCGMYYRDEC 189


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = -3

Query: 359 FSFVCNY*E*ALLSRLIQLCTSSYRPPC 276
           F+F  N     LLS LI +C   YR  C
Sbjct: 395 FAFPINLSVPVLLSGLIAMCGMYYRDEC 422


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = -3

Query: 359 FSFVCNY*E*ALLSRLIQLCTSSYRPPC 276
           F+F  N     LLS LI +C   YR  C
Sbjct: 395 FAFPINLSVPVLLSGLIAMCGMYYRDEC 422


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,108
Number of Sequences: 336
Number of extensions: 3095
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18010165
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)