Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021216
         (688 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0226 - 15859439-15860377                                         28   6.0  
06_01_0196 + 1520015-1520191,1520483-1520527,1521851-1521910,152...    28   6.0  

>09_04_0226 - 15859439-15860377
          Length = 312

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +3

Query: 165 HFSEVPNLIMEALAKHDFTATADDELSFR 251
           +FS VP L     A +DF   ADD+  FR
Sbjct: 147 YFSSVPRLFGGGEAAYDFVMKADDDTFFR 175


>06_01_0196 +
           1520015-1520191,1520483-1520527,1521851-1521910,
           1522246-1522358,1522432-1522642,1523087-1523133,
           1523211-1523369,1523521-1523624,1524300-1524634
          Length = 416

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +2

Query: 599 RLSVAFKTLNCATSSPRNVGAGSIRLH 679
           R S+A +TL CA     ++GAGS  LH
Sbjct: 164 RASLAAQTLPCAAPPMASIGAGSTPLH 190


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,641,121
Number of Sequences: 37544
Number of extensions: 310247
Number of successful extensions: 575
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 559
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 575
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)