Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021216
         (688 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g19960.1 68416.m02526 myosin (ATM) nearly identical to myosin...    33   0.18 
At5g38386.1 68418.m04638 F-box family protein contains F-box dom...    28   5.0  
At4g23860.2 68417.m03431 PHD finger protein-related similar to P...    28   5.0  
At4g23860.1 68417.m03430 PHD finger protein-related similar to P...    28   5.0  
At2g35110.1 68415.m04307 HEM protein-related weak similarity to ...    27   8.8  

>At3g19960.1 68416.m02526 myosin (ATM) nearly identical to myosin
           [Arabidopsis thaliana] GI:6491702; similar to myosin
           GI:6491702 from [Arabidopsis thaliana] ;contains Pfam
           profiles: PF00063: myosin head (motor domain), PF00612:
           IQ calmodulin-binding motif; identical to cDNA myosin
           (ATM) GI:297068
          Length = 1166

 Score = 33.1 bits (72), Expect = 0.18
 Identities = 17/62 (27%), Positives = 31/62 (50%)
 Frame = +2

Query: 272 LNMEDDMNWYRAELDGKEGLIPSNYIQMKNHSWYYGRITRADAEKLLANKPEGGFLIRIS 451
           L   D+  W       ++ ++ S +IQ+ N +W  G+I     E+ + + PEG  +  IS
Sbjct: 95  LPQSDERRWSDTSAYARKKILQS-WIQLPNGNWELGKILSTSGEESVISLPEGKVIKVIS 153

Query: 452 ES 457
           E+
Sbjct: 154 ET 155


>At5g38386.1 68418.m04638 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 403

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = +2

Query: 50  SFLFNIVRQYVHYDYFTSLTLDILESLCTLRVIFKN 157
           S L N +R  V Y YF+  TL++L   C    +FKN
Sbjct: 232 SRLMNSIRN-VRYLYFSRDTLEVLSLCCESMPVFKN 266


>At4g23860.2 68417.m03431 PHD finger protein-related similar to Pfam
           profiles PF02207: Putative zinc finger in N-recognin,
           weak hit to PF00628: PHD-finger
          Length = 452

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = -2

Query: 606 DRRGTMIIN*FVERIELDDPKEELARGVS*YFECWTPSGHL 484
           +  GT+ IN ++ER++ ++   +L  G     EC  P G++
Sbjct: 9   EAEGTITINEYIERLDAEELAADLVLGGDEGDECTFPKGYM 49


>At4g23860.1 68417.m03430 PHD finger protein-related similar to Pfam
           profiles PF02207: Putative zinc finger in N-recognin,
           weak hit to PF00628: PHD-finger
          Length = 452

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = -2

Query: 606 DRRGTMIIN*FVERIELDDPKEELARGVS*YFECWTPSGHL 484
           +  GT+ IN ++ER++ ++   +L  G     EC  P G++
Sbjct: 9   EAEGTITINEYIERLDAEELAADLVLGGDEGDECTFPKGYM 49


>At2g35110.1 68415.m04307 HEM protein-related weak similarity to
           Membrane-associated protein Hem (Dhem-2)
           (Swiss-Prot:P55162) [Drosophila melanogaster]; weak
           similarity to Nck-associated protein 1 (NAP 1)
           (p125Nap1) (Membrane-associated protein HEM-2)
           (Swiss-Prot:P55161) [Rattus norvegicus]
          Length = 1339

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = +1

Query: 448 QRIKPW*LLLISQMSGRCPALKVLRDASSKFFLWVVKFNSL 570
           Q ++PW  LL+  M+ R  AL+++ D SS     +   NSL
Sbjct: 152 QSLEPWIQLLLDLMAFREQALRLILDLSSTVITLLPHQNSL 192


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,778,880
Number of Sequences: 28952
Number of extensions: 264974
Number of successful extensions: 525
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 519
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 525
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1457719448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)