Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021214
         (710 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1805.10 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    29   0.50 
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|...    28   1.1  
SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|...    27   2.0  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   3.5  
SPAC20G8.08c |fft1||fun thirty related protein Fft1|Schizosaccha...    26   4.6  
SPBC1289.08 |||UDP-N-acetylglucosamine diphosphorylase |Schizosa...    26   6.1  
SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat protei...    26   6.1  
SPAC637.12c |mst1||histone acetyltransferase Mst1|Schizosaccharo...    26   6.1  

>SPAC1805.10 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 527

 Score = 29.5 bits (63), Expect = 0.50
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = +2

Query: 473 RWWTGLIAVLDCGNYV 520
           RWWT +++ L+CG Y+
Sbjct: 191 RWWTSVLSPLECGGYL 206


>SPBC1826.01c |mot1||TATA-binding protein associated factor
            Mot1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1953

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 5/71 (7%)
 Frame = -2

Query: 295  RSRSTECIGHTLHKLGERLRP---RNPSPVIRRESSAEARSTTPCADTDDILTLTRRI-V 128
            R  + ECI H + +LG R+ P       P++ R S A+         T    TL + + +
Sbjct: 1254 RQGAIECIYHVVQRLGVRILPYILYLIIPLLGRMSDAD--QDVRVLATTSFATLVKLVPL 1311

Query: 127  SAGRP-PPDAP 98
             AG P PPD P
Sbjct: 1312 EAGLPDPPDLP 1322


>SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 843

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 14/28 (50%), Positives = 16/28 (57%)
 Frame = -3

Query: 576 NTSSHQRIVETLHATPGRYT*FPQSNTA 493
           NTSSHQ    TL++TP R      SN A
Sbjct: 532 NTSSHQHYGSTLNSTPHRRNSIALSNRA 559


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
 Frame = -2

Query: 226 PSPVIRRESSAEARSTTPCADTDDILTLTRRIVSAGRPPPDAPCSQPGHCATLIISFYDK 47
           PS  I +E  A  R   P   T+ I+      +    P P+   +  G C  L++S+   
Sbjct: 3   PSSSITQEDKATIRKYIP-KSTNKIIAAAVVKLYVAYPDPNK-WNYTGLCGALVLSYDTT 60

Query: 46  STCC-FEILQI 17
           + CC F+++ +
Sbjct: 61  AKCCWFKLVDV 71


>SPAC20G8.08c |fft1||fun thirty related protein
           Fft1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 944

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 15/56 (26%), Positives = 26/56 (46%)
 Frame = +1

Query: 493 SGVRLWELRISTGCCMQRFYNSLMRRGIRGVVLISASDDDINEFIRQFPLFGSSCP 660
           SG+   E+ +   C +  F  SL  +GI+   L+      +  ++R+F  F   CP
Sbjct: 434 SGILADEMGLGKTCQVISFLASLKEKGIQNRHLVVVPSSTLGNWLREFEKF---CP 486


>SPBC1289.08 |||UDP-N-acetylglucosamine diphosphorylase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 475

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = -1

Query: 542 CMQHPV-DIRSSHNLTPLSSPSTIVVMSTIYRAIECIPVQGFSCQQ 408
           C + P  D+ S H  TPL+ P+   + S I+     + V+ F C Q
Sbjct: 355 CKKIPFYDVTSHHYTTPLN-PNGYKLESFIFDLFPSVSVENFGCFQ 399


>SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 945

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 16/40 (40%), Positives = 20/40 (50%)
 Frame = +1

Query: 442 SMARYIVLITTMVDGLDSGVRLWELRISTGCCMQRFYNSL 561
           S+A   V   T    +DSGV LW LR  T     R+ N+L
Sbjct: 199 SIAVISVAAETHEINVDSGVELWNLRAHTHQDWLRWCNAL 238


>SPAC637.12c |mst1||histone acetyltransferase
           Mst1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 463

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 522 IYRVLHAAFLQFADEKRYSWCRFNIC 599
           IYR  + +F +    K+ +WCR NIC
Sbjct: 245 IYRDDYISFFEIDGRKQRTWCR-NIC 269


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,868,730
Number of Sequences: 5004
Number of extensions: 57889
Number of successful extensions: 162
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)