Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021214
(710 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_20039| Best HMM Match : LRR_1 (HMM E-Value=0.0061) 35 0.075
SB_49097| Best HMM Match : F-box (HMM E-Value=1.6e-07) 34 0.099
SB_50743| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.17
SB_28962| Best HMM Match : F-box (HMM E-Value=6.3e-10) 33 0.17
SB_32529| Best HMM Match : Laminin_G_2 (HMM E-Value=0) 31 1.2
SB_43342| Best HMM Match : F-box (HMM E-Value=4.1e-09) 30 1.6
SB_23458| Best HMM Match : MCPVI (HMM E-Value=1.4) 30 1.6
SB_4015| Best HMM Match : F-box (HMM E-Value=5.9e-11) 30 1.6
SB_24051| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.1
SB_1208| Best HMM Match : GRAM (HMM E-Value=0.0034) 29 2.8
SB_8099| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_38996| Best HMM Match : Pepsin-I3 (HMM E-Value=1.7) 29 3.7
SB_27281| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_3953| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_24939| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.9
SB_20195| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.9
SB_7068| Best HMM Match : ResIII (HMM E-Value=0.29) 29 4.9
SB_33443| Best HMM Match : Glyco_transf_10 (HMM E-Value=1.1e-08) 29 4.9
SB_28931| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.9
SB_25505| Best HMM Match : zf-RanBP (HMM E-Value=0.0041) 29 4.9
SB_40442| Best HMM Match : zf-MYM (HMM E-Value=2.7) 28 6.5
SB_34510| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.5
SB_13832| Best HMM Match : LRR_1 (HMM E-Value=5.4e-10) 28 6.5
SB_4600| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.5
SB_3423| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.5
SB_43663| Best HMM Match : F-box (HMM E-Value=4e-07) 28 8.6
SB_29471| Best HMM Match : F-box (HMM E-Value=2.8e-08) 28 8.6
SB_58853| Best HMM Match : SNF (HMM E-Value=0) 28 8.6
SB_56951| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.6
SB_23071| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.6
>SB_20039| Best HMM Match : LRR_1 (HMM E-Value=0.0061)
Length = 608
Score = 34.7 bits (76), Expect = 0.075
Identities = 13/22 (59%), Positives = 16/22 (72%)
Frame = +2
Query: 425 LAQVCTRWRDILYSSPRWWTGL 490
LA VC RWRDI+Y++P W L
Sbjct: 134 LAVVCRRWRDIIYNTPILWKNL 155
>SB_49097| Best HMM Match : F-box (HMM E-Value=1.6e-07)
Length = 190
Score = 34.3 bits (75), Expect = 0.099
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +2
Query: 380 LEKFFLFFNSVDRRTLAQVCTRWRDILYSSPRW 478
L F + + D+ +AQVCT+WRD YS W
Sbjct: 17 LALIFAYLSVRDKGRVAQVCTKWRDAAYSRIVW 49
>SB_50743| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 84
Score = 33.5 bits (73), Expect = 0.17
Identities = 22/59 (37%), Positives = 29/59 (49%), Gaps = 6/59 (10%)
Frame = -2
Query: 268 HTLH--KLGERLRPRNPSPVI----RRESSAEARSTTPCADTDDILTLTRRIVSAGRPP 110
HT H K G+ + RN SP + R+ S +A + P T+D TRR V G PP
Sbjct: 4 HTTHPFKFGDNILSRNRSPPVSSLTRKYRSIKAPAKNPQVPTEDGKVRTRREVCPGGPP 62
>SB_28962| Best HMM Match : F-box (HMM E-Value=6.3e-10)
Length = 447
Score = 33.5 bits (73), Expect = 0.17
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +2
Query: 365 LDDRFLEKFFLFFNSVDRRTLAQVCTRWRDILYSSPRWWT 484
L D L + FL+ + D +A+VC +WR I Y W T
Sbjct: 5 LPDAVLLEIFLYLSRRDLGVVARVCKQWRRIAYDPSLWRT 44
>SB_32529| Best HMM Match : Laminin_G_2 (HMM E-Value=0)
Length = 1841
Score = 30.7 bits (66), Expect = 1.2
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +1
Query: 247 PPVCGAYGQCTLWTCCARTPSRSAPPAT 330
PP + +C WT C RT + SAP AT
Sbjct: 1496 PPPLRSTVRCLTWTDCPRTSTTSAPAAT 1523
>SB_43342| Best HMM Match : F-box (HMM E-Value=4.1e-09)
Length = 456
Score = 30.3 bits (65), Expect = 1.6
Identities = 11/38 (28%), Positives = 19/38 (50%)
Frame = +2
Query: 365 LDDRFLEKFFLFFNSVDRRTLAQVCTRWRDILYSSPRW 478
LD+ + K F + + D A+VC RW ++ + W
Sbjct: 49 LDNPVILKIFSYLSRADLLKAAEVCKRWHELSFDRSLW 86
>SB_23458| Best HMM Match : MCPVI (HMM E-Value=1.4)
Length = 770
Score = 30.3 bits (65), Expect = 1.6
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Frame = -2
Query: 211 RRE-SSAEARSTTPCADTDDILTLTRRIVSAGRPPPDAPCSQPGHCATLIIS 59
RRE ++A AR+ T TDD+ +A +PP P S+PG C + +++
Sbjct: 309 RRELAAAFARTPTATEGTDDVTPPA----NAQQPPLAVPASRPGQCKSRLLA 356
>SB_4015| Best HMM Match : F-box (HMM E-Value=5.9e-11)
Length = 130
Score = 30.3 bits (65), Expect = 1.6
Identities = 15/38 (39%), Positives = 17/38 (44%)
Frame = +2
Query: 365 LDDRFLEKFFLFFNSVDRRTLAQVCTRWRDILYSSPRW 478
L D L + F F LA VC RWRDI + W
Sbjct: 29 LPDSVLLQVFSFLCQRSLCKLALVCKRWRDIAFDGSLW 66
>SB_24051| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 889
Score = 29.9 bits (64), Expect = 2.1
Identities = 21/94 (22%), Positives = 36/94 (38%), Gaps = 4/94 (4%)
Frame = -2
Query: 328 SPAARNARGCGRSRSTECIGHTLHKLGERLRPRNPSPVIRRESSAEARSTTPCADTDDIL 149
+P S E G + +G R R + R + R+T P DD+
Sbjct: 452 TPVPERNSAWSASSVIEVAGLLVSLIGLYTRRRELAAAFTRTPAVNQRATDPLVVADDVT 511
Query: 148 TLTRRIVSAGRP----PPDAPCSQPGHCATLIIS 59
R ++A + P P S+PG C + +++
Sbjct: 512 PPARPPLAAAQQIKDRPLAVPASRPGQCKSRLLA 545
>SB_1208| Best HMM Match : GRAM (HMM E-Value=0.0034)
Length = 1021
Score = 29.5 bits (63), Expect = 2.8
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Frame = -3
Query: 585 DTTNTSSHQRIVETLHATP-GRYT*FPQSNTAIKPVHHRGDEYNISRHRVHTCARVLLST 409
D+ NTS H R+V L+A P F + +PV R + NI++ V R + +
Sbjct: 459 DSDNTSRHMRMVRCLNAFPKPPLPTFTHRPKSCEPVTGRKNAENITKENVDVLPRPMTAL 518
Query: 408 E 406
E
Sbjct: 519 E 519
>SB_8099| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 107
Score = 29.5 bits (63), Expect = 2.8
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = +3
Query: 99 GASGGGRPADTIRRVKVKMSSVSAQGVVERASAELSRRITGLGLRG 236
GA GG PA ++ K + S QG++ E+ +R+ LG RG
Sbjct: 38 GAVGGASPAAAVQSQDTKRKNESKQGLLRELQMEI-KRLKLLGPRG 82
>SB_38996| Best HMM Match : Pepsin-I3 (HMM E-Value=1.7)
Length = 865
Score = 29.1 bits (62), Expect = 3.7
Identities = 16/51 (31%), Positives = 25/51 (49%)
Frame = -2
Query: 211 RRESSAEARSTTPCADTDDILTLTRRIVSAGRPPPDAPCSQPGHCATLIIS 59
RR A A + T + TDD+ +A PP P S+PG C + +++
Sbjct: 658 RRRELAAAFTRTTTSKTDDVTPPA----NAQHPPLAVPASRPGQCKSRLLA 704
>SB_27281| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 436
Score = 29.1 bits (62), Expect = 3.7
Identities = 19/60 (31%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
Frame = -2
Query: 277 CIGHTLHKLGERLRPRNPSPVIRRESSAEARSTTPCADTDDILT--LTRRIVSAGRPPPD 104
C LHK+ + LR PSP + S S D++ T +V +GR PPD
Sbjct: 306 CSQPVLHKMLQDLRNSKPSPQLIPLRSLIQGSVHQILRNDELAVQCFTDALVKSGRSPPD 365
>SB_3953| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 214
Score = 29.1 bits (62), Expect = 3.7
Identities = 22/75 (29%), Positives = 34/75 (45%)
Frame = -2
Query: 307 RGCGRSRSTECIGHTLHKLGERLRPRNPSPVIRRESSAEARSTTPCADTDDILTLTRRIV 128
RG GRSR++ G L + P PS + + + ++ + C + T +R IV
Sbjct: 7 RGGGRSRTSGSPG--LQEFDSN--PNRPSNAVSGDQATTSQDS--CENIKSNETWSRDIV 60
Query: 127 SAGRPPPDAPCSQPG 83
S+ P C QPG
Sbjct: 61 SSASPHLAVSCGQPG 75
>SB_24939| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 868
Score = 28.7 bits (61), Expect = 4.9
Identities = 28/88 (31%), Positives = 37/88 (42%), Gaps = 2/88 (2%)
Frame = -2
Query: 427 KGSPVNRIKKQKKLF*KSVIQNKLIPKKRSR*GSPAARNARGCGRSRSTECIGHTLHKLG 248
KG P+ R +K L K P R R G P AR +GC +R +C ++ G
Sbjct: 402 KGCPLARYRKGCPL----ARYRKGCPLARYRKGCPLARYRKGCPLARYRKCCPLARYRKG 457
Query: 247 ERL-RPRNPSPVIR-RESSAEARSTTPC 170
L R R P+ R R+ AR C
Sbjct: 458 CPLTRYRKGCPLARYRKGCPLARYRKEC 485
>SB_20195| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1351
Score = 28.7 bits (61), Expect = 4.9
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Frame = -2
Query: 211 RRESSAEARSTTPCAD--TDDILTLTRRIVSAGRPPPDAPCSQPGHCATLIIS 59
RR A A + TP A TDD+ +A +PP P S+PG C + +++
Sbjct: 1301 RRRQLAAAFTCTPTATEGTDDVTPPA----NAQQPPLAVPASRPGQCKSRLLA 1349
>SB_7068| Best HMM Match : ResIII (HMM E-Value=0.29)
Length = 1131
Score = 28.7 bits (61), Expect = 4.9
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = -2
Query: 259 HKLGERLRPRNPSPVIRRESSAEARSTTPCADTDDIL 149
HKL L+P P+ RRE+ EA PC + D +L
Sbjct: 265 HKL---LKPLVPAEARRREADEEAAKQEPCREFDPLL 298
>SB_33443| Best HMM Match : Glyco_transf_10 (HMM E-Value=1.1e-08)
Length = 415
Score = 28.7 bits (61), Expect = 4.9
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = -2
Query: 115 PPPDAPCSQPGHC 77
PPP PCSQ G+C
Sbjct: 2 PPPQKPCSQDGYC 14
>SB_28931| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1035
Score = 28.7 bits (61), Expect = 4.9
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Frame = -2
Query: 211 RRE-SSAEARSTTPCADTDDILTLTRRIVSAGRPPPDAPCSQPGHCATLIIS 59
RRE ++A R+ T TDD+ +A +PP P S+PG C + +++
Sbjct: 472 RRELATAFTRTPTATEGTDDVTPPA----NAQQPPLAVPASRPGQCKSRLLA 519
>SB_25505| Best HMM Match : zf-RanBP (HMM E-Value=0.0041)
Length = 401
Score = 28.7 bits (61), Expect = 4.9
Identities = 16/46 (34%), Positives = 23/46 (50%)
Frame = +3
Query: 99 GASGGGRPADTIRRVKVKMSSVSAQGVVERASAELSRRITGLGLRG 236
GA GG PA ++ K + S QG++ E+ R+ LG RG
Sbjct: 115 GAVGGASPAAAVQTQDTKRKNESKQGLLRELQMEI-ERLKLLGPRG 159
>SB_40442| Best HMM Match : zf-MYM (HMM E-Value=2.7)
Length = 235
Score = 28.3 bits (60), Expect = 6.5
Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Frame = -2
Query: 211 RRESSAEARSTTPCAD--TDDILTLTRRIVSAGRPPPDAPCSQPGHCATLIIS 59
RRE +A A + TP A TDD+ +A +PP AP S+PG C + +++
Sbjct: 182 RRELAA-ALTRTPAATEGTDDVTPPA----NAQQPPLAAPASRPGICKSRLLA 229
>SB_34510| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1845
Score = 28.3 bits (60), Expect = 6.5
Identities = 19/52 (36%), Positives = 26/52 (50%)
Frame = -2
Query: 307 RGCGRSRSTECIGHTLHKLGERLRPRNPSPVIRRESSAEARSTTPCADTDDI 152
RG R++ C K G R PR PVIR+ SS ++ + +DT DI
Sbjct: 1022 RGTNRAKQITCPP----KRGLRKSPRK-LPVIRQRSSNDSTKPSQASDTSDI 1068
>SB_13832| Best HMM Match : LRR_1 (HMM E-Value=5.4e-10)
Length = 637
Score = 28.3 bits (60), Expect = 6.5
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +2
Query: 392 FLFFNSVDRRTLAQVCTRWRDILYSSPRWWTGLIAVL 502
F F + +++ +A VC WR+I+Y P W + +L
Sbjct: 21 FSFLQTHEKQAVALVCRFWRNIVY-LPSLWKNVQVIL 56
>SB_4600| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1140
Score = 28.3 bits (60), Expect = 6.5
Identities = 22/77 (28%), Positives = 34/77 (44%)
Frame = -2
Query: 289 RSTECIGHTLHKLGERLRPRNPSPVIRRESSAEARSTTPCADTDDILTLTRRIVSAGRPP 110
R T C TL +G R R + R + R+T TDD+ +A +PP
Sbjct: 1006 RDTSCRA-TLSLIGLYTRRRELAAAFTRTPVVKQRATE---GTDDVTPPA----NAQQPP 1057
Query: 109 PDAPCSQPGHCATLIIS 59
P S+PG C + +++
Sbjct: 1058 LAVPASRPGQCKSRLLA 1074
>SB_3423| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 562
Score = 28.3 bits (60), Expect = 6.5
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Frame = +2
Query: 362 ILDDRFLEKFFLFFNSV--DRRTLAQVCTRWRDILYSSP 472
IL D K F F+ V D +A VC +WR+++ ++P
Sbjct: 11 ILPDELWVKIFQCFHPVYEDLFAIACVCKKWRNLIITNP 49
>SB_43663| Best HMM Match : F-box (HMM E-Value=4e-07)
Length = 717
Score = 27.9 bits (59), Expect = 8.6
Identities = 11/38 (28%), Positives = 17/38 (44%)
Frame = +2
Query: 365 LDDRFLEKFFLFFNSVDRRTLAQVCTRWRDILYSSPRW 478
L + L + F + + +A+ CT WR I Y W
Sbjct: 314 LPESCLLRVFFYLDEAQLGRVARTCTTWRRIAYDCSLW 351
>SB_29471| Best HMM Match : F-box (HMM E-Value=2.8e-08)
Length = 473
Score = 27.9 bits (59), Expect = 8.6
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = +2
Query: 365 LDDRFLEKFFLFFNSVDRRTLAQVCTRWRDILYSSPRW 478
L D + K F F + D +++VC +W+ I Y W
Sbjct: 4 LPDVVVLKVFSFLSVADLGQVSRVCYQWQRIAYDHSLW 41
>SB_58853| Best HMM Match : SNF (HMM E-Value=0)
Length = 905
Score = 27.9 bits (59), Expect = 8.6
Identities = 8/22 (36%), Positives = 16/22 (72%)
Frame = +2
Query: 470 PRWWTGLIAVLDCGNYVYLPGV 535
P W +IA+L C +++++PG+
Sbjct: 501 PPWGYAMIALLICSSFLFIPGI 522
>SB_56951| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 815
Score = 27.9 bits (59), Expect = 8.6
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = -2
Query: 211 RRE-SSAEARSTTPCADTDDILTLTRRIVSAGRPPPDAPCSQPGHC 77
RRE ++A R+ T TDD+ +A +PP P S+PG C
Sbjct: 620 RRELAAAFTRTPTATEGTDDVTPPA----NAQQPPLSVPASRPGKC 661
>SB_23071| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1208
Score = 27.9 bits (59), Expect = 8.6
Identities = 18/65 (27%), Positives = 31/65 (47%)
Frame = -2
Query: 253 LGERLRPRNPSPVIRRESSAEARSTTPCADTDDILTLTRRIVSAGRPPPDAPCSQPGHCA 74
+G R R + R + + R+T TDD+ L +A +PP P S+PG C
Sbjct: 666 IGLYTRRRELAAAFTRTPAVKQRATE---GTDDVTPLA----NAQQPPLAVPASRPGQCK 718
Query: 73 TLIIS 59
+ +++
Sbjct: 719 SRLLA 723
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,487,158
Number of Sequences: 59808
Number of extensions: 478397
Number of successful extensions: 1500
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 1364
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1487
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1877743452
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -