Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021214
         (710 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039043-1|AAB94194.1| 5105|Caenorhabditis elegans Hypothetical ...    31   0.81 
Z38016-1|CAA86114.1|  856|Caenorhabditis elegans serine/threonin...    29   3.3  
AL117207-1|CAB60406.1|  856|Caenorhabditis elegans Hypothetical ...    29   3.3  
Z80789-1|CAB02551.1|  708|Caenorhabditis elegans Hypothetical pr...    29   4.3  
Z81070-4|CAB03003.2|  474|Caenorhabditis elegans Hypothetical pr...    28   5.7  
U28739-10|AAR25656.1|  683|Caenorhabditis elegans Hypothetical p...    28   7.6  

>AF039043-1|AAB94194.1| 5105|Caenorhabditis elegans Hypothetical
            protein F39C12.1 protein.
          Length = 5105

 Score = 31.1 bits (67), Expect = 0.81
 Identities = 19/55 (34%), Positives = 22/55 (40%), Gaps = 2/55 (3%)
 Frame = -2

Query: 226  PSPVIR--RESSAEARSTTPCADTDDILTLTRRIVSAGRPPPDAPCSQPGHCATL 68
            PSP +R  R  SAE+    P    D    LT    S   PPP  P  Q    A +
Sbjct: 2829 PSPPVRLLRPLSAESEEKVPVEKVDTPSPLTPPAASVPAPPPKMPADQQWRAAMM 2883


>Z38016-1|CAA86114.1|  856|Caenorhabditis elegans serine/threonine
           kinase protein.
          Length = 856

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = -2

Query: 241 LRPRNPSPVIRRESSAEARSTTPCADTDDILTLTRRIVSAGRPPP 107
           + P++  PV +R  S +  S TP     +   + RR+++ G P P
Sbjct: 302 ITPQSSLPVPKRAGSTKLDSPTPVRRIGESPRVQRRVITPGMPSP 346


>AL117207-1|CAB60406.1|  856|Caenorhabditis elegans Hypothetical
           protein Y60A3A.1 protein.
          Length = 856

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = -2

Query: 241 LRPRNPSPVIRRESSAEARSTTPCADTDDILTLTRRIVSAGRPPP 107
           + P++  PV +R  S +  S TP     +   + RR+++ G P P
Sbjct: 302 ITPQSSLPVPKRAGSTKLDSPTPVRRIGESPRVQRRVITPGMPSP 346


>Z80789-1|CAB02551.1|  708|Caenorhabditis elegans Hypothetical
           protein F48C11.2 protein.
          Length = 708

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = -1

Query: 533 HPVDIRSSHNLTPLSSPSTIVVMSTIYRAIECIPVQGFSCQQN 405
           HP+DI     L  +   S++ V++ I      IP+ G  CQ N
Sbjct: 59  HPLDINYEEILNYVQKQSSLPVLTGIVAGNTEIPIYGAICQSN 101


>Z81070-4|CAB03003.2|  474|Caenorhabditis elegans Hypothetical
           protein F26E4.5 protein.
          Length = 474

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
 Frame = +2

Query: 401 FNSVDRR-TLAQVCTRWRDILYSSPRW 478
           F  VD R T  QVC R++D+    P W
Sbjct: 434 FEPVDNRATFVQVCNRYKDLTSPLPTW 460


>U28739-10|AAR25656.1|  683|Caenorhabditis elegans Hypothetical
           protein C17G10.6a protein.
          Length = 683

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 26/92 (28%), Positives = 36/92 (39%), Gaps = 2/92 (2%)
 Frame = -2

Query: 424 GSPVNRIKKQKKLF*KSVIQNKLIPKKRSR*GSPAARNARGCGRSRSTECIGHTLHKLGE 245
           G   +  KKQKK   KS   NK   KK+S+ G    +N        S E I       G+
Sbjct: 545 GDDYSEEKKQKKKKKKSKKNNKRKGKKKSKKGKKGRKNHLSLDFLTSKEKIDQGKRNRGQ 604

Query: 244 RLRPRNPSPVIRR--ESSAEARSTTPCADTDD 155
            L   +    +++  +SS    S   CA   D
Sbjct: 605 ILDELHAGQDLKKLQKSSKSGESGVDCATAVD 636


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,411,786
Number of Sequences: 27780
Number of extensions: 352992
Number of successful extensions: 1106
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1058
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1106
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1655655746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)