Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021214
         (710 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor pro...    24   1.2  
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        24   1.2  
X72577-1|CAA51169.1|  283|Apis mellifera Apidaecin precursor pro...    24   1.6  
X72576-1|CAA51168.1|  144|Apis mellifera Apidaecin precursor pro...    23   2.9  
AF442148-1|AAL35349.1|  199|Apis mellifera apidaecin precursor p...    23   2.9  
DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein ...    23   3.8  
AJ973401-1|CAJ01448.1|  130|Apis mellifera hypothetical protein ...    23   3.8  
AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific pro...    23   3.8  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    22   5.0  
AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alph...    22   6.6  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   8.7  

>X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor
           protein.
          Length = 168

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -2

Query: 238 RPRNPSPVIRRESSAEARSTTP 173
           +PR P P +RRE  AE  +  P
Sbjct: 108 QPRPPHPRLRREPEAEPGNNRP 129



 Score = 24.2 bits (50), Expect = 1.2
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -2

Query: 238 RPRNPSPVIRRESSAEARSTTP 173
           +PR P P +RRE  AE  +  P
Sbjct: 134 QPRPPHPRLRREPEAEPGNNRP 155



 Score = 23.8 bits (49), Expect = 1.6
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -2

Query: 238 RPRNPSPVIRRESSAEA 188
           +PR P P +RRE+ +EA
Sbjct: 80  QPRPPHPRLRREAESEA 96



 Score = 21.4 bits (43), Expect = 8.7
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -2

Query: 238 RPRNPSPVIRRESSAEA 188
           +PR P P +RRE+  +A
Sbjct: 52  QPRPPHPRLRREAEPKA 68


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 13/26 (50%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
 Frame = -2

Query: 604 PKQILKRHHEYLFSSANCRN-AACNT 530
           PK   + HH+ LFSSAN     AC T
Sbjct: 7   PKYHQQFHHQQLFSSANPGTIQACTT 32


>X72577-1|CAA51169.1|  283|Apis mellifera Apidaecin precursor
           protein.
          Length = 283

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -2

Query: 238 RPRNPSPVIRRESSAEAR 185
           +PR P P +RRE+  EA+
Sbjct: 247 QPRPPHPRLRREAKPEAK 264



 Score = 23.0 bits (47), Expect = 2.9
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -2

Query: 238 RPRNPSPVIRRESSAEA 188
           +PR P P +RRE+  EA
Sbjct: 51  QPRPPHPRLRREAEPEA 67



 Score = 23.0 bits (47), Expect = 2.9
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -2

Query: 238 RPRNPSPVIRRESSAEA 188
           +PR P P +RRE+  EA
Sbjct: 79  QPRPPHPRLRREAELEA 95



 Score = 23.0 bits (47), Expect = 2.9
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -2

Query: 238 RPRNPSPVIRRESSAEA 188
           +PR P P +RRE+  EA
Sbjct: 107 QPRPPHPRLRREAEPEA 123



 Score = 23.0 bits (47), Expect = 2.9
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -2

Query: 238 RPRNPSPVIRRESSAEA 188
           +PR P P +RRE+  EA
Sbjct: 135 QPRPPHPRLRREAELEA 151



 Score = 23.0 bits (47), Expect = 2.9
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -2

Query: 238 RPRNPSPVIRRESSAEA 188
           +PR P P +RRE+  EA
Sbjct: 163 QPRPPHPRLRREAEPEA 179



 Score = 23.0 bits (47), Expect = 2.9
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -2

Query: 238 RPRNPSPVIRRESSAEA 188
           +PR P P +RRE+  EA
Sbjct: 191 QPRPPHPRLRREAEPEA 207



 Score = 23.0 bits (47), Expect = 2.9
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -2

Query: 238 RPRNPSPVIRRESSAEA 188
           +PR P P +RRE+  EA
Sbjct: 219 QPRPPHPRLRREAEPEA 235


>X72576-1|CAA51168.1|  144|Apis mellifera Apidaecin precursor
           protein.
          Length = 144

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -2

Query: 238 RPRNPSPVIRRESSAEA 188
           +PR P P +RRE+  EA
Sbjct: 52  QPRPPHPRLRREAEPEA 68



 Score = 23.0 bits (47), Expect = 2.9
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -2

Query: 238 RPRNPSPVIRRESSAEA 188
           +PR P P +RRE+  EA
Sbjct: 80  QPRPPHPRLRREAEPEA 96



 Score = 23.0 bits (47), Expect = 2.9
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -2

Query: 238 RPRNPSPVIRRESSAEA 188
           +PR P P +RRE+  EA
Sbjct: 108 QPRPPHPRLRREAEPEA 124


>AF442148-1|AAL35349.1|  199|Apis mellifera apidaecin precursor
           protein.
          Length = 199

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -2

Query: 238 RPRNPSPVIRRESSAEA 188
           +PR P P +RRE+  EA
Sbjct: 23  QPRPPHPRLRREAEPEA 39



 Score = 23.0 bits (47), Expect = 2.9
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -2

Query: 238 RPRNPSPVIRRESSAEA 188
           +PR P P +RRE+  EA
Sbjct: 51  QPRPPHPRLRREAEPEA 67



 Score = 23.0 bits (47), Expect = 2.9
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -2

Query: 238 RPRNPSPVIRRESSAEA 188
           +PR P P +RRE+  EA
Sbjct: 79  QPRPPHPRLRREAEPEA 95



 Score = 23.0 bits (47), Expect = 2.9
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -2

Query: 238 RPRNPSPVIRRESSAEA 188
           +PR P P +RRE+  EA
Sbjct: 107 QPRPPHPRLRREAEPEA 123



 Score = 23.0 bits (47), Expect = 2.9
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -2

Query: 238 RPRNPSPVIRRESSAEA 188
           +PR P P +RRE+  EA
Sbjct: 135 QPRPPHPRLRREAKPEA 151



 Score = 23.0 bits (47), Expect = 2.9
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -2

Query: 238 RPRNPSPVIRRESSAEA 188
           +PR P P +RRE+  EA
Sbjct: 163 QPRPPHPRLRREAEPEA 179


>DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein 3
           protein.
          Length = 130

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = +1

Query: 124 QILSDALKSKCRQCQHKE 177
           ++L DAL + C++C  K+
Sbjct: 66  RVLPDALATDCKKCTDKQ 83


>AJ973401-1|CAJ01448.1|  130|Apis mellifera hypothetical protein
           protein.
          Length = 130

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = +1

Query: 124 QILSDALKSKCRQCQHKE 177
           ++L DAL + C++C  K+
Sbjct: 66  RVLPDALATDCKKCTDKQ 83


>AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific
           protein 3c precursor protein.
          Length = 130

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = +1

Query: 124 QILSDALKSKCRQCQHKE 177
           ++L DAL + C++C  K+
Sbjct: 66  RVLPDALATDCKKCTDKQ 83


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +2

Query: 200 ALSTDHWTGVARP*AFPQFV 259
           A+S D +  V RP ++PQ +
Sbjct: 158 AISLDRYLAVTRPVSYPQIM 177


>AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alpha
           protein precursor protein.
          Length = 153

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 6/17 (35%), Positives = 11/17 (64%)
 Frame = +1

Query: 493 SGVRLWELRISTGCCMQ 543
           SG ++W++  S  CC +
Sbjct: 64  SGSKIWQMERSCMCCQE 80


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 6/8 (75%), Positives = 7/8 (87%)
 Frame = +3

Query: 72  VAQWPGCE 95
           V +WPGCE
Sbjct: 282 VCKWPGCE 289


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 194,551
Number of Sequences: 438
Number of extensions: 4053
Number of successful extensions: 35
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21926700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)