Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021214
(710 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g40340.1 68418.m04894 PWWP domain-containing protein KED, Nic... 32 0.43
At3g06360.1 68416.m00734 arabinogalactan-protein (AGP27) 31 0.75
At2g02480.1 68415.m00187 DNA polymerase-related weak similarity ... 31 1.00
At1g18280.1 68414.m02282 protease inhibitor/seed storage/lipid t... 29 2.3
At3g54480.2 68416.m06028 SKP1 interacting partner 5 (SKIP5) iden... 28 5.3
At3g54480.1 68416.m06027 SKP1 interacting partner 5 (SKIP5) iden... 28 5.3
At1g47056.1 68414.m05221 F-box family protein ; similar to SKP1... 28 5.3
At5g67130.1 68418.m08463 expressed protein 28 7.0
At4g33210.1 68417.m04728 F-box family protein (FBL15) contains s... 28 7.0
At4g32300.1 68417.m04596 lectin protein kinase family protein co... 28 7.0
At3g05680.1 68416.m00634 expressed protein 28 7.0
At4g35560.1 68417.m05053 expressed protein 27 9.3
At3g03260.1 68416.m00322 homeobox-leucine zipper family protein ... 27 9.3
At2g48160.1 68415.m06031 PWWP domain-containing protein 27 9.3
At2g37340.3 68415.m04580 splicing factor RSZ33 (RSZ33) nearly id... 27 9.3
At2g37340.2 68415.m04579 splicing factor RSZ33 (RSZ33) nearly id... 27 9.3
At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly id... 27 9.3
At2g21380.1 68415.m02544 kinesin motor protein-related 27 9.3
At1g31350.1 68414.m03836 F-box family protein similar to hypothe... 27 9.3
>At5g40340.1 68418.m04894 PWWP domain-containing protein KED,
Nicotiana tabacum, EMBL:AB009883
Length = 1008
Score = 31.9 bits (69), Expect = 0.43
Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Frame = -2
Query: 346 KRSR*GSPAARN-ARGCGRSRSTE-CIGHTLHKLGERLRPRNPSPVIRRESSAEARSTTP 173
KRSR AA + RS E C G H+L R + ++ + +I +ES+A+ R T
Sbjct: 342 KRSRVEEVAALDHEESSSLQRSLEKCSGFPDHRLPHRRKEKSITEIIEKESAAKVRFETE 401
Query: 172 CADTD 158
AD D
Sbjct: 402 PADGD 406
>At3g06360.1 68416.m00734 arabinogalactan-protein (AGP27)
Length = 125
Score = 31.1 bits (67), Expect = 0.75
Identities = 19/88 (21%), Positives = 34/88 (38%), Gaps = 1/88 (1%)
Frame = -2
Query: 286 STECIGHTLHKLGERLRPRNPSPVIRRESSAEARSTTPCADTDDI-LTLTRRIVSAGRPP 110
S++ I + K+ + P PSP + + + ST P + DD+ + PP
Sbjct: 30 SSQTISPSEEKISPEIAPLLPSPAVSSTQTIPSSSTLPEPENDDVSADPDPAFAPSASPP 89
Query: 109 PDAPCSQPGHCATLIISFYDKSTCCFEI 26
+ S + I F + CF +
Sbjct: 90 ASSLASLSSQAPGVFIYFVFAAVYCFSL 117
>At2g02480.1 68415.m00187 DNA polymerase-related weak similarity to
DNA polymerase III holoenzyme tau subunit [Thermus
thermophilus] GI:2583049
Length = 1218
Score = 30.7 bits (66), Expect = 1.00
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +1
Query: 592 ISASDDDINEFIRQFPLFGSSCPCYWLKKVYYNR*GARS 708
++ DD++++ + G PCYW KK +R G RS
Sbjct: 288 VNDGDDELDDNLDLPGRQGCGIPCYWTKKAMKHRGGCRS 326
>At1g18280.1 68414.m02282 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein similar to lipid
transfer protein GI:2627141 from (Picea abies); contains
Pfam profile PF00234 Protease inhibitor/seed storage/LTP
family
Length = 180
Score = 29.5 bits (63), Expect = 2.3
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = +1
Query: 235 AVSVPPVCGAYGQCTLWTCCARTPSRSAPPAT 330
A+ +P CGA +L A T S S PPAT
Sbjct: 97 ALDLPKACGAKADVSLCKTSAGTNSSSTPPAT 128
>At3g54480.2 68416.m06028 SKP1 interacting partner 5 (SKIP5)
identical to GP:14348816 SKP1-interacting partner 5
{Arabidopsis thaliana}
Length = 118
Score = 28.3 bits (60), Expect = 5.3
Identities = 17/40 (42%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Frame = +2
Query: 365 LDDRFLEKFFLFFNSV-DRRTLAQVCTRWRDILYSSPRWW 481
LDD L F + + DR A VC RWR L PR W
Sbjct: 38 LDDGCLMHILSFLSPIPDRYNTALVCHRWR-YLACHPRLW 76
>At3g54480.1 68416.m06027 SKP1 interacting partner 5 (SKIP5)
identical to GP:14348816 SKP1-interacting partner 5
{Arabidopsis thaliana}
Length = 274
Score = 28.3 bits (60), Expect = 5.3
Identities = 17/40 (42%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Frame = +2
Query: 365 LDDRFLEKFFLFFNSV-DRRTLAQVCTRWRDILYSSPRWW 481
LDD L F + + DR A VC RWR L PR W
Sbjct: 38 LDDGCLMHILSFLSPIPDRYNTALVCHRWR-YLACHPRLW 76
>At1g47056.1 68414.m05221 F-box family protein ; similar to SKP1
interacting partner 2 (SKIP2) TIGR_Ath1:At5g67250
Length = 518
Score = 28.3 bits (60), Expect = 5.3
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = +2
Query: 365 LDDRFLEKFFLFFNSVDRRTLAQVCTRW 448
L D L F F NS +R+ A VC RW
Sbjct: 43 LPDECLALVFQFLNSGNRKRCALVCRRW 70
>At5g67130.1 68418.m08463 expressed protein
Length = 426
Score = 27.9 bits (59), Expect = 7.0
Identities = 16/54 (29%), Positives = 24/54 (44%)
Frame = +1
Query: 205 LDGSLDWGCAAVSVPPVCGAYGQCTLWTCCARTPSRSAPPATLTATSSLESIYF 366
++G + GC +S AYG C T RTPS + + + S S+ F
Sbjct: 345 MNGPVLCGCETLSACQPGAAYGSCKNVTVQTRTPSMDSTAGSNSGGSYSGSVQF 398
>At4g33210.1 68417.m04728 F-box family protein (FBL15) contains
similarity to F-box protein FBL2 GI:6063090 from [Homo
sapiens]
Length = 942
Score = 27.9 bits (59), Expect = 7.0
Identities = 13/29 (44%), Positives = 14/29 (48%)
Frame = +2
Query: 365 LDDRFLEKFFLFFNSVDRRTLAQVCTRWR 451
L D L F F N VD A VC +WR
Sbjct: 193 LTDDLLHMVFSFLNHVDLCRSAMVCRQWR 221
>At4g32300.1 68417.m04596 lectin protein kinase family protein
contains Pfam domains, PF01453: Lectin (probable mannose
binding) and PF00069: Protein kinase domain
Length = 821
Score = 27.9 bits (59), Expect = 7.0
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = -2
Query: 223 SPVIRRESSAEARSTTPCADTDDILTLTRRIVSAG 119
S + R S + T+PC T D TL ++VSAG
Sbjct: 306 SGLSRARSDCKTGITSPCKKTKDNATLPLQLVSAG 340
>At3g05680.1 68416.m00634 expressed protein
Length = 2057
Score = 27.9 bits (59), Expect = 7.0
Identities = 10/32 (31%), Positives = 20/32 (62%)
Frame = -2
Query: 247 ERLRPRNPSPVIRRESSAEARSTTPCADTDDI 152
+R R +NPS ++ E+ + ++ TP DT+ +
Sbjct: 1536 QRERGQNPSTIVVGEAVVQVKNPTPARDTEKV 1567
>At4g35560.1 68417.m05053 expressed protein
Length = 917
Score = 27.5 bits (58), Expect = 9.3
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = -1
Query: 344 EVAVRVAGGAEREGVRAQQVH-RVHWPYAPQTGGTLTAAQP 225
E+A + GG+ EG+RA V R+ Y +G L A P
Sbjct: 8 EIAAKKPGGSSSEGLRANDVEPRIALHYGIPSGSHLFAYDP 48
>At3g03260.1 68416.m00322 homeobox-leucine zipper family protein /
lipid-binding START domain-containing protein similar to
L1 specific homeobox gene ATML1/ovule-specific homeobox
protein A20, GB:CAB36819
Length = 699
Score = 27.5 bits (58), Expect = 9.3
Identities = 21/71 (29%), Positives = 35/71 (49%)
Frame = -1
Query: 485 PSTIVVMSTIYRAIECIPVQGFSCQQN*KTKKTFLKICHPK*IDSKEEVAVRVAGGAERE 306
P IVV ++ AI P+Q F+ QN T++ + + + ++ E+A V G +E
Sbjct: 506 PPGIVVSASSSLAIPLTPLQVFAFLQNLDTRQQWDILSYGTVVN---EIARIVTGSSETN 562
Query: 305 GVRAQQVHRVH 273
V +VH H
Sbjct: 563 CVTILRVHPTH 573
>At2g48160.1 68415.m06031 PWWP domain-containing protein
Length = 1366
Score = 27.5 bits (58), Expect = 9.3
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = -2
Query: 127 SAGRPPPDAPCSQPGHCA 74
S+ PPP AP SQ G CA
Sbjct: 1142 SSSPPPPPAPPSQQGECA 1159
>At2g37340.3 68415.m04580 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 249
Score = 27.5 bits (58), Expect = 9.3
Identities = 25/61 (40%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Frame = -2
Query: 352 PKKRSR*GSPAARNARGCGRSRSTECIGHTLHKLGE-RLRPRNPSPVIRRESSAEARSTT 176
PKK R GS +R RSRS L R R+ SPV RRE S E RS +
Sbjct: 99 PKKLRRSGS----YSRSPVRSRSPRRRRSPSRSLSRSRSYSRSRSPVRRRERSVEERSRS 154
Query: 175 P 173
P
Sbjct: 155 P 155
>At2g37340.2 68415.m04579 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 260
Score = 27.5 bits (58), Expect = 9.3
Identities = 25/61 (40%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Frame = -2
Query: 352 PKKRSR*GSPAARNARGCGRSRSTECIGHTLHKLGE-RLRPRNPSPVIRRESSAEARSTT 176
PKK R GS +R RSRS L R R+ SPV RRE S E RS +
Sbjct: 110 PKKLRRSGS----YSRSPVRSRSPRRRRSPSRSLSRSRSYSRSRSPVRRRERSVEERSRS 165
Query: 175 P 173
P
Sbjct: 166 P 166
>At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 290
Score = 27.5 bits (58), Expect = 9.3
Identities = 25/61 (40%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Frame = -2
Query: 352 PKKRSR*GSPAARNARGCGRSRSTECIGHTLHKLGE-RLRPRNPSPVIRRESSAEARSTT 176
PKK R GS +R RSRS L R R+ SPV RRE S E RS +
Sbjct: 140 PKKLRRSGS----YSRSPVRSRSPRRRRSPSRSLSRSRSYSRSRSPVRRRERSVEERSRS 195
Query: 175 P 173
P
Sbjct: 196 P 196
>At2g21380.1 68415.m02544 kinesin motor protein-related
Length = 1058
Score = 27.5 bits (58), Expect = 9.3
Identities = 25/81 (30%), Positives = 36/81 (44%)
Frame = +3
Query: 216 TGLGLRGRKRSPSLWSVWPMHSVDLLRPHPLAFRAAGDPHRDLFFGINLFWMTDF*KSFF 395
TG LR R+ S + V L H L+F AAG+ HR + G N F + +S
Sbjct: 244 TGQNLRIREDSQGTYVEGIKEEVVLSPGHALSFIAAGEEHRHV--GSNNFNLMSS-RSHT 300
Query: 396 CFLILLTGEPLHRYALDGAIY 458
F +++ H DG I+
Sbjct: 301 IFTLMIESS-AHGDQYDGVIF 320
>At1g31350.1 68414.m03836 F-box family protein similar to
hypothetical protein GB:AAF24593 GI:6692128 from
[Arabidopsis thaliana] ; similar to SKP1 interacting
partner 2 (SKIP2) TIGR_Ath1:At5g67250
Length = 395
Score = 27.5 bits (58), Expect = 9.3
Identities = 10/14 (71%), Positives = 12/14 (85%)
Frame = +2
Query: 425 LAQVCTRWRDILYS 466
L+ VCTRWR +LYS
Sbjct: 57 LSAVCTRWRRLLYS 70
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,366,706
Number of Sequences: 28952
Number of extensions: 323048
Number of successful extensions: 942
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 922
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 941
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1535986264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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