Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021213
         (707 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce...    27   2.6  
SPCC1919.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    25   8.0  

>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2100

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 16/43 (37%), Positives = 20/43 (46%)
 Frame = +1

Query: 109  GDRGYPGRPGLQGEQGMKGNKGQAAELVYGAKGEPGPRGLPGN 237
            G+  Y    G++ EQG       A EL+  A G   P  LPGN
Sbjct: 1491 GEVDYHVARGVRSEQGSGPVTDFAIELLRTAVGGENPMALPGN 1533


>SPCC1919.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 256

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = -3

Query: 213 WFSFCAVHEFCRLAFITFHPLFTL*AWSSWIATI 112
           W+   A   F  +  IT +PL+ L +W+ ++  I
Sbjct: 92  WYFIRAPARFILMVGITLYPLYVLLSWAVFLGII 125


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,692,741
Number of Sequences: 5004
Number of extensions: 55873
Number of successful extensions: 165
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)