Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021213
(707 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0145 + 1092764-1093351 34 0.13
01_06_0243 + 27833497-27834042,27834144-27834238,27834400-27835567 31 0.68
07_03_0897 - 22389116-22389600,22389611-22389728 31 1.2
06_03_0310 - 19453047-19453160,19453240-19453338,19453441-194535... 30 1.6
05_03_0195 - 9560885-9561435,9561553-9561639,9562199-9563225 30 2.1
11_02_0082 - 8088169-8088284,8088613-8088697,8090344-8090442,809... 29 2.7
04_04_0397 - 24921892-24922947,24923486-24923734,24923807-249241... 29 2.7
12_02_0122 + 13923510-13925081 29 3.6
02_03_0388 + 18429538-18430598,18430971-18431081,18431165-184312... 29 3.6
09_02_0362 + 7860088-7860197,7861606-7861636,7861738-7861801,786... 29 4.8
05_07_0130 + 27892416-27892737,27893526-27893604,27893689-278938... 29 4.8
03_05_0989 + 29483281-29484612 29 4.8
01_01_0929 - 7344911-7345978 29 4.8
09_02_0168 - 5253588-5254688 28 6.3
08_01_0080 + 566509-566746,566904-567151,567347-567532,567639-56... 28 6.3
06_02_0120 + 12055076-12055175,12055322-12055725 28 6.3
01_01_1051 + 8290395-8290760,8291611-8291820,8292874-8292978,829... 28 6.3
12_02_0299 - 17051570-17052474,17053542-17053755 28 8.4
04_04_0726 + 27588225-27588685,27588768-27588895,27590523-27591016 28 8.4
01_05_0726 - 24630080-24630778,24630899-24631011,24631088-246311... 28 8.4
>06_01_0145 + 1092764-1093351
Length = 195
Score = 33.9 bits (74), Expect = 0.13
Identities = 20/51 (39%), Positives = 26/51 (50%)
Frame = +1
Query: 91 GPPGQKGDRGYPGRPGLQGEQGMKGNKGQAAELVYGAKGEPGPRGLPGNDG 243
G PGQ G+ G PG G +G +G +G +G A + G G RG G G
Sbjct: 16 GEPGQPGEPGQPGGRG-RGGRGGRGGRGGAGGRLGVRHGRRGRRGGGGARG 65
Score = 29.9 bits (64), Expect = 2.1
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = +1
Query: 124 PGRPGLQGEQGMKGNKGQAAELVYGAKGEPGPR 222
PG PG GE G G +G+ G +G G R
Sbjct: 15 PGEPGQPGEPGQPGGRGRGGRGGRGGRGGAGGR 47
Score = 29.5 bits (63), Expect = 2.7
Identities = 18/52 (34%), Positives = 22/52 (42%), Gaps = 2/52 (3%)
Frame = +1
Query: 103 QKGDRGYPGRPGLQGEQGMKGNKGQAAELVYGAK--GEPGPRGLPGNDGLPG 252
Q G+ G PG PG G +G G G+ G + G RG G G G
Sbjct: 14 QPGEPGQPGEPGQPGGRGRGGRGGRGGRGGAGGRLGVRHGRRGRRGGGGARG 65
>01_06_0243 + 27833497-27834042,27834144-27834238,27834400-27835567
Length = 602
Score = 31.5 bits (68), Expect = 0.68
Identities = 27/91 (29%), Positives = 39/91 (42%), Gaps = 2/91 (2%)
Frame = +3
Query: 315 FTGARGFPGPRGLPGIQGMEGERGEIGMTGQ--SGLPGAPGAPCVSQDFLTGILLVRHSQ 488
F G +G P LP G+ E+ E+G G SGL AP S+ L + L +
Sbjct: 44 FQGKQGQAVP--LPRGGGLRREQQELGAAGPGGSGLSKAPPRSAPSKVALDSLKLPVDTS 101
Query: 489 REVVPQWNPVTSNYGMDILYCT*MATKKPII 581
WN V+ N G+ ++ M K I+
Sbjct: 102 AGFAGGWNLVSENSGVSAMHLVVMQHGKAIM 132
>07_03_0897 - 22389116-22389600,22389611-22389728
Length = 200
Score = 30.7 bits (66), Expect = 1.2
Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = -1
Query: 305 PLFTRGSIITWTTRNAVTPGRPSFPGKPRGPGSPFAPY-TSSAAWPLLPFIPCSP 144
PL RG+ + ++R AV+ S P P PY +SSAA LLP + SP
Sbjct: 57 PLHRRGAAVVLSSRTAVS--LLSSSSSPFAHQQPCRPYWSSSAAQGLLPLLRASP 109
>06_03_0310 -
19453047-19453160,19453240-19453338,19453441-19453513,
19453598-19453708,19453795-19453956,19454064-19454340,
19454542-19455160,19455256-19455471
Length = 556
Score = 30.3 bits (65), Expect = 1.6
Identities = 17/51 (33%), Positives = 21/51 (41%)
Frame = -1
Query: 296 TRGSIITWTTRNAVTPGRPSFPGKPRGPGSPFAPYTSSAAWPLLPFIPCSP 144
T +II W R + PGR + P P P P + P LP P P
Sbjct: 127 TSHAIILWHRRYIILPGRQAASRAPSPPAPPSPPQDPA---PSLPHAPAPP 174
>05_03_0195 - 9560885-9561435,9561553-9561639,9562199-9563225
Length = 554
Score = 29.9 bits (64), Expect = 2.1
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = +3
Query: 312 GFTGARGFPGPRGLPGIQGMEGERGEIGMTGQSGLPGAPGAPCVS 446
G TG +G+ + G+ G +G + G +G+P PCV+
Sbjct: 469 GKTGDQGWSNRHCVAGLTGDQGRSDRLHAAGLTGIPERSDRPCVA 513
>11_02_0082 -
8088169-8088284,8088613-8088697,8090344-8090442,
8090537-8090609,8090694-8090804,8090901-8091074,
8091184-8091574,8091662-8092283,8092379-8093251,
8093294-8093800
Length = 1016
Score = 29.5 bits (63), Expect = 2.7
Identities = 18/54 (33%), Positives = 23/54 (42%), Gaps = 3/54 (5%)
Frame = -1
Query: 296 TRGSIITWTTRNAVTPGRPS---FPGKPRGPGSPFAPYTSSAAWPLLPFIPCSP 144
T +II W + PGR + P P P P P S PL P +P +P
Sbjct: 515 TSHAIILWRRWYIILPGRQAASRAPSPPAPPSPPQDPAPSPPHDPLAPSLPQAP 568
>04_04_0397 -
24921892-24922947,24923486-24923734,24923807-24924157,
24924244-24924331,24924466-24924563,24925141-24925362,
24925490-24925585,24926410-24926481,24927156-24927305
Length = 793
Score = 29.5 bits (63), Expect = 2.7
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +3
Query: 312 GFTGARGFPGPRGLPGIQGMEGERGEI 392
G G G PG R +PG+ G++ + E+
Sbjct: 498 GMPGTPGMPGSRKMPGMPGLDNDNWEV 524
Score = 27.9 bits (59), Expect = 8.4
Identities = 17/35 (48%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = +3
Query: 330 GFPGPRGLPGIQGM-EGERGEIGMTGQSGLPGAPG 431
GFP R PG GM G G GM G +PG PG
Sbjct: 484 GFPMNR--PGTGGMMPGMPGTPGMPGSRKMPGMPG 516
>12_02_0122 + 13923510-13925081
Length = 523
Score = 29.1 bits (62), Expect = 3.6
Identities = 15/55 (27%), Positives = 28/55 (50%)
Frame = +2
Query: 71 LVEPDRLVRQVRKVIVAIQEDQAYKVNKG*KVIKAKRQNSCTAQKENQDRVVCQE 235
LVE + ++ + A +ED+ K KG + +K K Q + + E +D+ +E
Sbjct: 462 LVEALNMAKEEAQANKAAKEDEEAKAAKGIEEMKTKEQATTNGEDEGKDKRTSEE 516
>02_03_0388 +
18429538-18430598,18430971-18431081,18431165-18431237,
18431513-18431695
Length = 475
Score = 29.1 bits (62), Expect = 3.6
Identities = 14/45 (31%), Positives = 20/45 (44%)
Frame = -1
Query: 296 TRGSIITWTTRNAVTPGRPSFPGKPRGPGSPFAPYTSSAAWPLLP 162
T +II W + + PGR + P P P P S+ + P P
Sbjct: 51 TSHTIILWRKQYIIIPGRQAASRAPSPPAPPSPPQASAPSPPHAP 95
>09_02_0362 +
7860088-7860197,7861606-7861636,7861738-7861801,
7861922-7862052,7863575-7863784,7863891-7863956,
7864868-7865075,7866270-7866325,7866406-7867128,
7868246-7868299,7868667-7868695,7869501-7869585,
7870032-7870202,7870246-7870827
Length = 839
Score = 28.7 bits (61), Expect = 4.8
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = +1
Query: 145 GEQGMKGNKGQAAELVYGAKGEPGPRGLPGNDGLPG 252
G+Q M+G+ +++ G GP +PG +PG
Sbjct: 799 GQQYMQGHGRTVQQMMQGKMAPQGPGSMPGAGSMPG 834
>05_07_0130 +
27892416-27892737,27893526-27893604,27893689-27893806,
27894306-27894365
Length = 192
Score = 28.7 bits (61), Expect = 4.8
Identities = 17/45 (37%), Positives = 19/45 (42%)
Frame = +3
Query: 330 GFPGPRGLPGIQGMEGERGEIGMTGQSGLPGAPGAPCVSQDFLTG 464
GFP P PG G G G Q P AP P +Q + TG
Sbjct: 63 GFPQPAPPPGFAGASGGGGHYHHHHQQ-QPYAPAEPYYAQGYQTG 106
>03_05_0989 + 29483281-29484612
Length = 443
Score = 28.7 bits (61), Expect = 4.8
Identities = 20/70 (28%), Positives = 34/70 (48%)
Frame = +1
Query: 94 PPGQKGDRGYPGRPGLQGEQGMKGNKGQAAELVYGAKGEPGPRGLPGNDGLPGVTAFLVV 273
PPG+ D RP ++GE+ M+G G+A+ ++ PG G + G+ A V
Sbjct: 19 PPGEF-DSARRTRPRMEGEEEMRGRGGKASARA-RSQSPPGGSGSAARVEVEGMGASAVP 76
Query: 274 QVIMDPLVKR 303
++ + KR
Sbjct: 77 DDMLLEVFKR 86
>01_01_0929 - 7344911-7345978
Length = 355
Score = 28.7 bits (61), Expect = 4.8
Identities = 20/59 (33%), Positives = 24/59 (40%), Gaps = 5/59 (8%)
Frame = -1
Query: 305 PLFTRGSIITWTTRNAVTPGRPSFPGK---PRGPGSPFAPYTS--SAAWPLLPFIPCSP 144
PL + + W+ P PS P K P P PF P+ S PL P PC P
Sbjct: 3 PLHLQSPFLLWSPAPPTPPLPPSPPSKTRRPPPPPPPFCPHLSVPCVGLPLPP--PCPP 59
>09_02_0168 - 5253588-5254688
Length = 366
Score = 28.3 bits (60), Expect = 6.3
Identities = 14/32 (43%), Positives = 16/32 (50%)
Frame = +1
Query: 118 GYPGRPGLQGEQGMKGNKGQAAELVYGAKGEP 213
G PGR Q + + KG AA LV G G P
Sbjct: 134 GAPGRVSFQADSDAQLTKGLAALLVLGLSGAP 165
>08_01_0080 +
566509-566746,566904-567151,567347-567532,567639-567734,
567836-567907,567990-568106,570531-571676
Length = 700
Score = 28.3 bits (60), Expect = 6.3
Identities = 15/41 (36%), Positives = 19/41 (46%)
Frame = +1
Query: 121 YPGRPGLQGEQGMKGNKGQAAELVYGAKGEPGPRGLPGNDG 243
Y G+P +QG + A YG G+ PRG P DG
Sbjct: 474 YYGQPPAGPQQGYPPQQDPYAR-PYGGPGQWAPRGAPAGDG 513
>06_02_0120 + 12055076-12055175,12055322-12055725
Length = 167
Score = 28.3 bits (60), Expect = 6.3
Identities = 19/54 (35%), Positives = 20/54 (37%)
Frame = +1
Query: 91 GPPGQKGDRGYPGRPGLQGEQGMKGNKGQAAELVYGAKGEPGPRGLPGNDGLPG 252
G PG G G PG G G G YG+ G G G PG G G
Sbjct: 75 GQPGYGGGYGQPGYGSGYGPGYGGGGSGPGYGGGYGSPGYGGGYGSPGYGGGSG 128
>01_01_1051 +
8290395-8290760,8291611-8291820,8292874-8292978,
8293040-8293048,8294426-8294539,8294632-8294796
Length = 322
Score = 28.3 bits (60), Expect = 6.3
Identities = 14/38 (36%), Positives = 16/38 (42%)
Frame = +3
Query: 309 RGFTGARGFPGPRGLPGIQGMEGERGEIGMTGQSGLPG 422
+GF G G G+P G IG TGQ PG
Sbjct: 189 KGFAGGMKRHGFSGMPASHGASLSHRSIGSTGQRDAPG 226
>12_02_0299 - 17051570-17052474,17053542-17053755
Length = 372
Score = 27.9 bits (59), Expect = 8.4
Identities = 14/36 (38%), Positives = 14/36 (38%)
Frame = -1
Query: 251 PGRPSFPGKPRGPGSPFAPYTSSAAWPLLPFIPCSP 144
P PSF P P P P S WP P P P
Sbjct: 311 PPLPSFYPSPPPPPPPPPPPPPSFPWPFPPLAPLFP 346
>04_04_0726 + 27588225-27588685,27588768-27588895,27590523-27591016
Length = 360
Score = 27.9 bits (59), Expect = 8.4
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = -1
Query: 224 PRGP-GSPFAPYTSSAAWPLLPFIPCSPCK 138
PRG G +AP +S P PF+P +PC+
Sbjct: 13 PRGVVGMHWAPVVTSPPSPQPPFLPPAPCR 42
>01_05_0726 -
24630080-24630778,24630899-24631011,24631088-24631169,
24631248-24631337,24631412-24631469,24631661-24631756,
24631835-24631908,24632006-24632068,24634111-24634320,
24634869-24635048
Length = 554
Score = 27.9 bits (59), Expect = 8.4
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -1
Query: 215 PGSPFAPYTSSAAWPLLPFIP 153
PG+P PYTSS P P +P
Sbjct: 377 PGAPSHPYTSSEPLPQTPAVP 397
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,740,215
Number of Sequences: 37544
Number of extensions: 383290
Number of successful extensions: 1172
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1072
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1165
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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