Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021213
         (707 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    34   0.002
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    26   0.30 
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    26   0.30 
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    26   0.30 
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             25   0.93 
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       24   1.6  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   6.6  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          21   8.7  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      21   8.7  

>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 33.9 bits (74), Expect = 0.002
 Identities = 13/34 (38%), Positives = 22/34 (64%)
 Frame = +3

Query: 321 GARGFPGPRGLPGIQGMEGERGEIGMTGQSGLPG 422
           G +G    +G+ G+QG++G +G  G+ G  G+PG
Sbjct: 843 GVQGVQTAQGVQGVQGVQGVQGVQGVQGVQGVPG 876



 Score = 32.3 bits (70), Expect = 0.005
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +3

Query: 327 RGFPGPRGLPGIQGMEGERGEIGMTGQSGLPGAPG 431
           +G  G +   G+QG++G +G  G+ G  G+ G PG
Sbjct: 842 QGVQGVQTAQGVQGVQGVQGVQGVQGVQGVQGVPG 876



 Score = 29.5 bits (63), Expect = 0.033
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +3

Query: 339 GPRGLPGIQGMEGERGEIGMTGQSGLPGAPGAPCVSQ 449
           G +G+   QG++G +G  G+ G  G+ G  G P + Q
Sbjct: 843 GVQGVQTAQGVQGVQGVQGVQGVQGVQGVQGVPGLLQ 879



 Score = 28.7 bits (61), Expect = 0.057
 Identities = 15/38 (39%), Positives = 23/38 (60%)
 Frame = +1

Query: 103 QKGDRGYPGRPGLQGEQGMKGNKGQAAELVYGAKGEPG 216
           Q+G +G     G+QG QG++G +G   + V G +G PG
Sbjct: 841 QQGVQGVQTAQGVQGVQGVQGVQG--VQGVQGVQGVPG 876



 Score = 27.1 bits (57), Expect = 0.17
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = +1

Query: 100 GQKGDRGYPGRPGLQGEQGMKGNKG--QAAELVYG 198
           G +G +G  G  G+QG QG++G  G  Q  + V+G
Sbjct: 852 GVQGVQGVQGVQGVQGVQGVQGVPGLLQGVQQVFG 886



 Score = 24.2 bits (50), Expect = 1.2
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +1

Query: 91  GPPGQKGDRGYPGRPGLQGEQGMKGNKG 174
           G  G +  +G  G  G+QG QG++G +G
Sbjct: 843 GVQGVQTAQGVQGVQGVQGVQGVQGVQG 870


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 26.2 bits (55), Expect = 0.30
 Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = +1

Query: 157 MKGNKGQA-AELVYGAKGEPGPRGLPGNDG 243
           M+ N+ Q  AE +  A+  PGP G+PG+ G
Sbjct: 313 MRKNRFQKIAESMKTARENPGPPGVPGDHG 342



 Score = 22.2 bits (45), Expect = 5.0
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +3

Query: 324 ARGFPGPRGLPGIQG 368
           AR  PGP G+PG  G
Sbjct: 328 ARENPGPPGVPGDHG 342


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 26.2 bits (55), Expect = 0.30
 Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = +1

Query: 157 MKGNKGQA-AELVYGAKGEPGPRGLPGNDG 243
           M+ N+ Q  AE +  A+  PGP G+PG+ G
Sbjct: 313 MRKNRFQKIAESMKTARENPGPPGVPGDHG 342



 Score = 22.2 bits (45), Expect = 5.0
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +3

Query: 324 ARGFPGPRGLPGIQG 368
           AR  PGP G+PG  G
Sbjct: 328 ARENPGPPGVPGDHG 342


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 26.2 bits (55), Expect = 0.30
 Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = +1

Query: 157 MKGNKGQA-AELVYGAKGEPGPRGLPGNDG 243
           M+ N+ Q  AE +  A+  PGP G+PG+ G
Sbjct: 252 MRKNRFQKIAESMKTARENPGPPGVPGDHG 281



 Score = 22.2 bits (45), Expect = 5.0
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +3

Query: 324 ARGFPGPRGLPGIQG 368
           AR  PGP G+PG  G
Sbjct: 267 ARENPGPPGVPGDHG 281


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 24.6 bits (51), Expect = 0.93
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = +3

Query: 300  KGDRGFTGARGFPGPRGLPGIQGMEG 377
            K  + FT   G PGP G+     MEG
Sbjct: 1127 KPQKPFTSPGGIPGPNGIKMPSFMEG 1152


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 14/37 (37%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
 Frame = +3

Query: 330 GFPGPRGLPGIQGMEGERGEIGMTGQSGLPGA-PGAP 437
           G PGP+  P       +RG      Q   PG  PGAP
Sbjct: 19  GAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAP 55


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -1

Query: 260 AVTPGRPSFPGKPRGPGSPFAP 195
           A+T   PS+PG      SP +P
Sbjct: 75  AITSTSPSYPGGGSSSPSPSSP 96


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = -3

Query: 576 WAFSLPSMYNKEYPSHN 526
           W F++P+MY K+   +N
Sbjct: 661 WNFTIPNMYFKDVFIYN 677


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = -3

Query: 576 WAFSLPSMYNKEYPSHN 526
           W F++P+MY K+   +N
Sbjct: 661 WNFTIPNMYFKDVFIYN 677


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 190,245
Number of Sequences: 438
Number of extensions: 4493
Number of successful extensions: 26
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21804885
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)